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TRAF3IP3 (TRAF3 interacting protein 3)

Identity

Alias_symbol (synonym)T3JAM
Other alias
HGNC (Hugo) TRAF3IP3
LocusID (NCBI) 80342
Atlas_Id 75100
Location 1q32.2  [Link to chromosome band 1q32]
Location_base_pair Starts at 209941833 and ends at 209953002 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C19orf70 (19p13.3) / TRAF3IP3 (1q32.2)LRRTM4 (2p12) / TRAF3IP3 (1q32.2)TRAF3IP3 (1q32.2) / C19orf70 (19p13.3)
WWC1 (5q34) / TRAF3IP3 (1q32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAF3IP3   30766
Cards
Entrez_Gene (NCBI)TRAF3IP3  80342  TRAF3 interacting protein 3
AliasesT3JAM
GeneCards (Weizmann)TRAF3IP3
Ensembl hg19 (Hinxton)ENSG00000009790 [Gene_View]  chr1:209941833-209953002 [Contig_View]  TRAF3IP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000009790 [Gene_View]  chr1:209941833-209953002 [Contig_View]  TRAF3IP3 [Vega]
ICGC DataPortalENSG00000009790
TCGA cBioPortalTRAF3IP3
AceView (NCBI)TRAF3IP3
Genatlas (Paris)TRAF3IP3
WikiGenes80342
SOURCE (Princeton)TRAF3IP3
Genetics Home Reference (NIH)TRAF3IP3
Genomic and cartography
GoldenPath hg19 (UCSC)TRAF3IP3  -     chr1:209941833-209953002 +  1q32.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAF3IP3  -     1q32.2   [Description]    (hg38-Dec_2013)
EnsemblTRAF3IP3 - 1q32.2 [CytoView hg19]  TRAF3IP3 - 1q32.2 [CytoView hg38]
Mapping of homologs : NCBITRAF3IP3 [Mapview hg19]  TRAF3IP3 [Mapview hg38]
OMIM608255   
Gene and transcription
Genbank (Entrez)AK092905 AK122792 AK125601 AK126139 AK225762
RefSeq transcript (Entrez)NM_001287754 NM_025228
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_033934 NT_004487 NW_004929294
Consensus coding sequences : CCDS (NCBI)TRAF3IP3
Cluster EST : UnigeneHs.147434 [ NCBI ]
CGAP (NCI)Hs.147434
Alternative Splicing GalleryENSG00000009790
Gene ExpressionTRAF3IP3 [ NCBI-GEO ]   TRAF3IP3 [ EBI - ARRAY_EXPRESS ]   TRAF3IP3 [ SEEK ]   TRAF3IP3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAF3IP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80342
GTEX Portal (Tissue expression)TRAF3IP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y228   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y228  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y228
Splice isoforms : SwissVarQ9Y228
PhosPhoSitePlusQ9Y228
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRAF3IP3
DMDM Disease mutations80342
Blocks (Seattle)TRAF3IP3
SuperfamilyQ9Y228
Human Protein AtlasENSG00000009790
Peptide AtlasQ9Y228
HPRD16305
IPIIPI00719170   IPI00645440   IPI00019248   IPI00910153   IPI00946368   IPI00984842   IPI00640511   IPI01015762   IPI00945513   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y228
IntAct (EBI)Q9Y228
FunCoupENSG00000009790
BioGRIDTRAF3IP3
STRING (EMBL)TRAF3IP3
ZODIACTRAF3IP3
Ontologies - Pathways
QuickGOQ9Y228
Ontology : AmiGOprotein binding  integral component of membrane  
Ontology : EGO-EBIprotein binding  integral component of membrane  
NDEx NetworkTRAF3IP3
Atlas of Cancer Signalling NetworkTRAF3IP3
Wikipedia pathwaysTRAF3IP3
Orthology - Evolution
OrthoDB80342
GeneTree (enSembl)ENSG00000009790
Phylogenetic Trees/Animal Genes : TreeFamTRAF3IP3
HOVERGENQ9Y228
HOGENOMQ9Y228
Homologs : HomoloGeneTRAF3IP3
Homology/Alignments : Family Browser (UCSC)TRAF3IP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAF3IP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAF3IP3
dbVarTRAF3IP3
ClinVarTRAF3IP3
1000_GenomesTRAF3IP3 
Exome Variant ServerTRAF3IP3
ExAC (Exome Aggregation Consortium)TRAF3IP3 (select the gene name)
Genetic variants : HAPMAP80342
Genomic Variants (DGV)TRAF3IP3 [DGVbeta]
DECIPHER (Syndromes)1:209941833-209953002  ENSG00000009790
CONAN: Copy Number AnalysisTRAF3IP3 
Mutations
ICGC Data PortalTRAF3IP3 
TCGA Data PortalTRAF3IP3 
Broad Tumor PortalTRAF3IP3
OASIS PortalTRAF3IP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAF3IP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAF3IP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAF3IP3
DgiDB (Drug Gene Interaction Database)TRAF3IP3
DoCM (Curated mutations)TRAF3IP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAF3IP3 (select a term)
intoGenTRAF3IP3
Cancer3DTRAF3IP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608255   
Orphanet
MedgenTRAF3IP3
Genetic Testing Registry TRAF3IP3
NextProtQ9Y228 [Medical]
TSGene80342
GENETestsTRAF3IP3
Huge Navigator TRAF3IP3 [HugePedia]
snp3D : Map Gene to Disease80342
BioCentury BCIQTRAF3IP3
ClinGenTRAF3IP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80342
Chemical/Pharm GKB GenePA142670711
Clinical trialTRAF3IP3
Miscellaneous
canSAR (ICR)TRAF3IP3 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAF3IP3
EVEXTRAF3IP3
GoPubMedTRAF3IP3
iHOPTRAF3IP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:49:29 CET 2017

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