Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TRAF6 (TNF receptor associated factor 6)

Identity

Alias_namesTNF receptor-associated factor 6, E3 ubiquitin protein ligase
Alias_symbol (synonym)RNF85
Other aliasMGC:3310
HGNC (Hugo) TRAF6
LocusID (NCBI) 7189
Atlas_Id 42688
Location 11p12  [Link to chromosome band 11p12]
Location_base_pair Starts at 36483767 and ends at 36510313 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRAF6 (11p12) / GANAB (11q12.3)TRAF6 (11p12) / TRAF6 (11p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRAF6   12036
Cards
Entrez_Gene (NCBI)TRAF6  7189  TNF receptor associated factor 6
AliasesMGC:3310; RNF85
GeneCards (Weizmann)TRAF6
Ensembl hg19 (Hinxton)ENSG00000175104 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175104 [Gene_View]  ENSG00000175104 [Sequence]  chr11:36483767-36510313 [Contig_View]  TRAF6 [Vega]
ICGC DataPortalENSG00000175104
TCGA cBioPortalTRAF6
AceView (NCBI)TRAF6
Genatlas (Paris)TRAF6
WikiGenes7189
SOURCE (Princeton)TRAF6
Genetics Home Reference (NIH)TRAF6
Genomic and cartography
GoldenPath hg38 (UCSC)TRAF6  -     chr11:36483767-36510313 -  11p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAF6  -     11p12   [Description]    (hg19-Feb_2009)
GoldenPathTRAF6 - 11p12 [CytoView hg19]  TRAF6 - 11p12 [CytoView hg38]
ImmunoBaseENSG00000175104
Mapping of homologs : NCBITRAF6 [Mapview hg19]  TRAF6 [Mapview hg38]
OMIM602355   
Gene and transcription
Genbank (Entrez)AK128396 AK292978 BC031052 BI463192 BQ187062
RefSeq transcript (Entrez)NM_004620 NM_145803
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAF6
Alternative Splicing GalleryENSG00000175104
Gene ExpressionTRAF6 [ NCBI-GEO ]   TRAF6 [ EBI - ARRAY_EXPRESS ]   TRAF6 [ SEEK ]   TRAF6 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAF6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7189
GTEX Portal (Tissue expression)TRAF6
Human Protein AtlasENSG00000175104-TRAF6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRAF6
DMDM Disease mutations7189
Blocks (Seattle)TRAF6
Human Protein Atlas [tissue]ENSG00000175104-TRAF6 [tissue]
HPRD03833
IPIIPI00743663   
Protein Interaction databases
FunCoupENSG00000175104
BioGRIDTRAF6
STRING (EMBL)TRAF6
ZODIACTRAF6
Ontologies - Pathways
Huge Navigator TRAF6 [HugePedia]
snp3D : Map Gene to Disease7189
BioCentury BCIQTRAF6
ClinGenTRAF6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7189
Chemical/Pharm GKB GenePA36713
Clinical trialTRAF6
Miscellaneous
canSAR (ICR)TRAF6 (select the gene name)
DataMed IndexTRAF6
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAF6
EVEXTRAF6
GoPubMedTRAF6
iHOPTRAF6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:14:08 CET 2020
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