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TRAIP (TRAF interacting protein)

Identity

Alias (NCBI)RNF206
SCKL9
TRIP
HGNC (Hugo) TRAIP
HGNC Alias symbTRIP
RNF206
HGNC Alias namering finger protein 206
LocusID (NCBI) 10293
Atlas_Id 42705
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49828614 and ends at 49856564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IP6K1 (3p21.31) / TRAIP (3p21.31)TYMS (18p11.32) / TRAIP (3p21.31)IP6K1 3p21.31 / TRAIP 3p21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRAIP   30764
Cards
Entrez_Gene (NCBI)TRAIP    TRAF interacting protein
AliasesRNF206; SCKL9; TRIP
GeneCards (Weizmann)TRAIP
Ensembl hg19 (Hinxton)ENSG00000183763 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183763 [Gene_View]  ENSG00000183763 [Sequence]  chr3:49828614-49856564 [Contig_View]  TRAIP [Vega]
ICGC DataPortalENSG00000183763
TCGA cBioPortalTRAIP
AceView (NCBI)TRAIP
Genatlas (Paris)TRAIP
SOURCE (Princeton)TRAIP
Genetics Home Reference (NIH)TRAIP
Genomic and cartography
GoldenPath hg38 (UCSC)TRAIP  -     chr3:49828614-49856564 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAIP  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathTRAIP - 3p21.31 [CytoView hg19]  TRAIP - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000183763
Genome Data Viewer NCBITRAIP [Mapview hg19]  
OMIM605958   616777   
Gene and transcription
Genbank (Entrez)AB451320 AB451449 AK225873 AK292172 AK295780
RefSeq transcript (Entrez)NM_005879
Consensus coding sequences : CCDS (NCBI)TRAIP
Gene ExpressionTRAIP [ NCBI-GEO ]   TRAIP [ EBI - ARRAY_EXPRESS ]   TRAIP [ SEEK ]   TRAIP [ MEM ]
Gene Expression Viewer (FireBrowse)TRAIP [ Firebrowse - Broad ]
GenevisibleExpression of TRAIP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10293
GTEX Portal (Tissue expression)TRAIP
Human Protein AtlasENSG00000183763-TRAIP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWF2
PhosPhoSitePlusQ9BWF2
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)TRAIP
PDB (RSDB)4ZTD   
PDB Europe4ZTD   
PDB (PDBSum)4ZTD   
PDB (IMB)4ZTD   
Structural Biology KnowledgeBase4ZTD   
SCOP (Structural Classification of Proteins)4ZTD   
CATH (Classification of proteins structures)4ZTD   
SuperfamilyQ9BWF2
AlphaFold pdb e-kbQ9BWF2   
Human Protein Atlas [tissue]ENSG00000183763-TRAIP [tissue]
HPRD05811
Protein Interaction databases
DIP (DOE-UCLA)Q9BWF2
IntAct (EBI)Q9BWF2
BioGRIDTRAIP
STRING (EMBL)TRAIP
ZODIACTRAIP
Ontologies - Pathways
QuickGOQ9BWF2
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  nucleoplasm  nucleolus  apoptotic process  cellular response to DNA damage stimulus  signal transduction  negative regulation of tumor necrosis factor-mediated signaling pathway  protein ubiquitination  protein ubiquitination  replication fork processing  replication fork processing  negative regulation of NF-kappaB transcription factor activity  negative regulation of interferon-beta production  identical protein binding  metal ion binding  perinuclear region of cytoplasm  ubiquitin protein ligase activity  site of DNA damage  protein-DNA covalent cross-linking repair  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  nucleoplasm  nucleolus  apoptotic process  cellular response to DNA damage stimulus  signal transduction  negative regulation of tumor necrosis factor-mediated signaling pathway  protein ubiquitination  protein ubiquitination  replication fork processing  replication fork processing  negative regulation of NF-kappaB transcription factor activity  negative regulation of interferon-beta production  identical protein binding  metal ion binding  perinuclear region of cytoplasm  ubiquitin protein ligase activity  site of DNA damage  protein-DNA covalent cross-linking repair  
NDEx NetworkTRAIP
Atlas of Cancer Signalling NetworkTRAIP
Wikipedia pathwaysTRAIP
Orthology - Evolution
OrthoDB10293
GeneTree (enSembl)ENSG00000183763
Phylogenetic Trees/Animal Genes : TreeFamTRAIP
Homologs : HomoloGeneTRAIP
Homology/Alignments : Family Browser (UCSC)TRAIP
Gene fusions - Rearrangements
Fusion : MitelmanIP6K1/TRAIP [3p21.31/3p21.31]  
Fusion : QuiverTRAIP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAIP
dbVarTRAIP
ClinVarTRAIP
MonarchTRAIP
1000_GenomesTRAIP 
Exome Variant ServerTRAIP
GNOMAD BrowserENSG00000183763
Varsome BrowserTRAIP
ACMGTRAIP variants
VarityQ9BWF2
Genomic Variants (DGV)TRAIP [DGVbeta]
DECIPHERTRAIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAIP 
Mutations
ICGC Data PortalTRAIP 
TCGA Data PortalTRAIP 
Broad Tumor PortalTRAIP
OASIS PortalTRAIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAIP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAIP
Mutations and Diseases : HGMDTRAIP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRAIP
DgiDB (Drug Gene Interaction Database)TRAIP
DoCM (Curated mutations)TRAIP
CIViC (Clinical Interpretations of Variants in Cancer)TRAIP
Cancer3DTRAIP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605958    616777   
Orphanet954   
DisGeNETTRAIP
MedgenTRAIP
Genetic Testing Registry TRAIP
NextProtQ9BWF2 [Medical]
GENETestsTRAIP
Target ValidationTRAIP
Huge Navigator TRAIP [HugePedia]
ClinGenTRAIP
Clinical trials, drugs, therapy
MyCancerGenomeTRAIP
Protein Interactions : CTDTRAIP
Pharm GKB GenePA142670705
PharosQ9BWF2
Clinical trialTRAIP
Miscellaneous
canSAR (ICR)TRAIP
HarmonizomeTRAIP
DataMed IndexTRAIP
Probes
Litterature
PubMed46 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRAIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:10 CEST 2021

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