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TRAIP (TRAF interacting protein)

Identity

Other namesRNF206
TRIP
HGNC (Hugo) TRAIP
LocusID (NCBI) 10293
Location 3p21.31
Location_base_pair Starts at 49866028 and ends at 49893992 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRAIP   30764
Entrez_Gene (NCBI)TRAIP  10293  TRAF interacting protein
Cards
GeneCards (Weizmann)TRAIP
Ensembl (Hinxton)ENSG00000183763 [Gene_View]  chr3:49866028-49893992 [Contig_View]  TRAIP [Vega]
AceView (NCBI)TRAIP
Genatlas (Paris)TRAIP
SOURCE (Stanford)NM_005879
Genomic and cartography
GoldenPath (UCSC)TRAIP  -  3p21.31   chr3:49866028-49893992 -  3p21.31   [Description]    (hg19-Feb_2009)
EnsemblTRAIP - 3p21.31 [CytoView]
Mapping of homologs : NCBITRAIP [Mapview]
OMIM605958   
Gene and transcription
Genbank (Entrez)AB451320 AB451449 AK225873 AK292172 AK295780
RefSeq transcript (SRS)NM_005879
RefSeq transcript (Entrez)NM_005879
RefSeq genomic (SRS)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838877 NW_004078011
Consensus coding sequences : CCDS (NCBI)TRAIP
Cluster EST : UnigeneHs.517972 [ SRS ] Hs.517972 [ NCBI ]
CGAP (NCI)Hs.517972
Alternative Splicing : Fast-db (Paris)GSHG0021728
Alternative Splicing GalleryENSG00000183763
Gene ExpressionTRAIP [ NCBI-GEO ]   TRAIP [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWF2 (SRS) Q9BWF2 (Uniprot)
NextProtQ9BWF2
With graphics : InterProQ9BWF2
Splice isoforms : SwissVarQ9BWF2(Swissvar)
Domaine pattern : Prosite (SRS)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domaine pattern : Prosite (Expaxy)ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)Prefoldin    Znf_RING    Znf_RING/FYVE/PHD   
Domains : Interpro (EBI)Prefoldin    Znf_RING    Znf_RING/FYVE/PHD   
Related proteins : CluSTrQ9BWF2
Domain families : Pfam (SRS)zf-RING_2 (PF13639)   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
DMDM10293
Blocks (Seattle)Q9BWF2
Human Protein AtlasENSG00000183763
HPRD05811
IPIIPI00306611   IPI00946250   IPI00945877   IPI00945761   IPI00945598   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWF2
IntAct (EBI)Q9BWF2
FunCoupENSG00000183763
REACTOMETRAIP
Protein Interaction Database10293
BioGRIDTRAIP
InParanoidQ9BWF2
Interologous Interaction database Q9BWF2
IntegromeDBTRAIP
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TRAIP
SNP (GeneSNP Utah)TRAIP
SNP : HGBaseTRAIP
Genetic variants : HAPMAPTRAIP
Somatic Mutations in Cancer : COSMICTRAIP 
CONAN: Copy Number AnalysisTRAIP 
Mutations and Diseases : HGMDTRAIP
OMIM605958   
GENETests605958   
Disease Genetic AssociationTRAIP
Huge Navigator TRAIP [HugePedia]  TRAIP [HugeCancerGEM]
Genomic VariantsTRAIP  TRAIP [DGVbeta]
snp3D : Map Gene to Disease10293
General knowledge
Homologs : HomoloGeneTRAIP
Homology/Alignments : Family Browser (UCSC)TRAIP
Phylogenetic Trees/Animal Genes : TreeFamTRAIP
Chemical/Protein Interactions : CTD10293
Chemical/Pharm GKB GenePA142670705
Clinical trialTRAIP
Cancer Resource (Charite)ENSG00000183763
Ontology : AmiGOreceptor signaling protein activity  protein binding  cytoplasm  plasma membrane  induction of apoptosis  signal transduction  zinc ion binding  cell proliferation  metal ion binding  perinuclear region of cytoplasm  
Ontology : EGO-EBIreceptor signaling protein activity  protein binding  cytoplasm  plasma membrane  induction of apoptosis  signal transduction  zinc ion binding  cell proliferation  metal ion binding  perinuclear region of cytoplasm  
Other databases
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
PubGeneTRAIP
iHOPTRAIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:49:14 CEST 2013
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