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TRAIP (TRAF interacting protein)

Identity

Alias_symbol (synonym)TRIP
RNF206
Other aliasSCKL9
HGNC (Hugo) TRAIP
LocusID (NCBI) 10293
Atlas_Id 42705
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 49828595 and ends at 49856559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IP6K1 (3p21.31) / TRAIP (3p21.31)TYMS (18p11.32) / TRAIP (3p21.31)IP6K1 3p21.31 / TRAIP 3p21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAIP   30764
Cards
Entrez_Gene (NCBI)TRAIP  10293  TRAF interacting protein
AliasesRNF206; SCKL9; TRIP
GeneCards (Weizmann)TRAIP
Ensembl hg19 (Hinxton)ENSG00000183763 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183763 [Gene_View]  chr3:49828595-49856559 [Contig_View]  TRAIP [Vega]
ICGC DataPortalENSG00000183763
TCGA cBioPortalTRAIP
AceView (NCBI)TRAIP
Genatlas (Paris)TRAIP
WikiGenes10293
SOURCE (Princeton)TRAIP
Genetics Home Reference (NIH)TRAIP
Genomic and cartography
GoldenPath hg38 (UCSC)TRAIP  -     chr3:49828595-49856559 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAIP  -     3p21.31   [Description]    (hg19-Feb_2009)
EnsemblTRAIP - 3p21.31 [CytoView hg19]  TRAIP - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBITRAIP [Mapview hg19]  TRAIP [Mapview hg38]
OMIM605958   616777   
Gene and transcription
Genbank (Entrez)AB451320 AB451449 AK225873 AK292172 AK295780
RefSeq transcript (Entrez)NM_005879
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAIP
Cluster EST : UnigeneHs.517972 [ NCBI ]
CGAP (NCI)Hs.517972
Alternative Splicing GalleryENSG00000183763
Gene ExpressionTRAIP [ NCBI-GEO ]   TRAIP [ EBI - ARRAY_EXPRESS ]   TRAIP [ SEEK ]   TRAIP [ MEM ]
Gene Expression Viewer (FireBrowse)TRAIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10293
GTEX Portal (Tissue expression)TRAIP
Human Protein AtlasENSG00000183763-TRAIP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWF2
Splice isoforms : SwissVarQ9BWF2
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ9BWF2
Domaine pattern : Prosite (Expaxy)ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Prefoldin    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam13639   
Domain families : Smart (EMBL)RING (SM00184)  
Conserved Domain (NCBI)TRAIP
DMDM Disease mutations10293
Blocks (Seattle)TRAIP
PDB (SRS)4ZTD   
PDB (PDBSum)4ZTD   
PDB (IMB)4ZTD   
PDB (RSDB)4ZTD   
Structural Biology KnowledgeBase4ZTD   
SCOP (Structural Classification of Proteins)4ZTD   
CATH (Classification of proteins structures)4ZTD   
SuperfamilyQ9BWF2
Human Protein Atlas [tissue]ENSG00000183763-TRAIP [tissue]
Peptide AtlasQ9BWF2
HPRD05811
IPIIPI00306611   IPI00946250   IPI00945877   IPI00945761   IPI00945598   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWF2
IntAct (EBI)Q9BWF2
FunCoupENSG00000183763
BioGRIDTRAIP
STRING (EMBL)TRAIP
ZODIACTRAIP
Ontologies - Pathways
QuickGOQ9BWF2
Ontology : AmiGOsignal transducer activity, downstream of receptor  protein binding  nucleolus  apoptotic process  signal transduction  zinc ion binding  cell proliferation  negative regulation of tumor necrosis factor-mediated signaling pathway  protein ubiquitination  negative regulation of interferon-beta production  perinuclear region of cytoplasm  ubiquitin protein ligase activity  
Ontology : EGO-EBIsignal transducer activity, downstream of receptor  protein binding  nucleolus  apoptotic process  signal transduction  zinc ion binding  cell proliferation  negative regulation of tumor necrosis factor-mediated signaling pathway  protein ubiquitination  negative regulation of interferon-beta production  perinuclear region of cytoplasm  ubiquitin protein ligase activity  
NDEx NetworkTRAIP
Atlas of Cancer Signalling NetworkTRAIP
Wikipedia pathwaysTRAIP
Orthology - Evolution
OrthoDB10293
GeneTree (enSembl)ENSG00000183763
Phylogenetic Trees/Animal Genes : TreeFamTRAIP
HOVERGENQ9BWF2
HOGENOMQ9BWF2
Homologs : HomoloGeneTRAIP
Homology/Alignments : Family Browser (UCSC)TRAIP
Gene fusions - Rearrangements
Fusion : MitelmanIP6K1/TRAIP [3p21.31/3p21.31]  [t(3;3)(p21;p21)]  
Fusion: TCGA_MDACCIP6K1 3p21.31 TRAIP 3p21.31 HNSC
Tumor Fusion PortalTRAIP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAIP
dbVarTRAIP
ClinVarTRAIP
1000_GenomesTRAIP 
Exome Variant ServerTRAIP
ExAC (Exome Aggregation Consortium)ENSG00000183763
GNOMAD BrowserENSG00000183763
Genetic variants : HAPMAP10293
Genomic Variants (DGV)TRAIP [DGVbeta]
DECIPHERTRAIP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAIP 
Mutations
ICGC Data PortalTRAIP 
TCGA Data PortalTRAIP 
Broad Tumor PortalTRAIP
OASIS PortalTRAIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAIP
DgiDB (Drug Gene Interaction Database)TRAIP
DoCM (Curated mutations)TRAIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAIP (select a term)
intoGenTRAIP
Cancer3DTRAIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605958    616777   
Orphanet954   
DisGeNETTRAIP
MedgenTRAIP
Genetic Testing Registry TRAIP
NextProtQ9BWF2 [Medical]
TSGene10293
GENETestsTRAIP
Target ValidationTRAIP
Huge Navigator TRAIP [HugePedia]
snp3D : Map Gene to Disease10293
BioCentury BCIQTRAIP
ClinGenTRAIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10293
Chemical/Pharm GKB GenePA142670705
Clinical trialTRAIP
Miscellaneous
canSAR (ICR)TRAIP (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAIP
EVEXTRAIP
GoPubMedTRAIP
iHOPTRAIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:39:33 CET 2017

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