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TRAK1 (trafficking kinesin protein 1)

Identity

Alias (NCBI)DEE68
EIEE68
MILT1
OIP106
HGNC (Hugo) TRAK1
HGNC Alias symbOIP106
KIAA1042
MILT1
HGNC Alias nameOGT(O Glc NAc transferase) interacting protein 106 KDa
 O-linked N-acetylglucosamine transferase interacting protein 106
 milton homolog 1 (Drosophila)
HGNC Previous nametrafficking protein, kinesin binding 1
LocusID (NCBI) 22906
Atlas_Id 50704
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42160193 and ends at 42212617 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APEH (3p21.31) / TRAK1 (3p22.1)TRAK1 (3p22.1) / ALDOC (17q11.2)TRAK1 (3p22.1) / ARL13B (3q11.1)
TRAK1 (3p22.1) / HES6 (2q37.3)TRAK1 (3p22.1) / PPARGC1B (5q32)TRAK1 (3p22.1) / RAF1 (3p25.2)
TRAK1 (3p22.1) / TRAK1 (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRAK1   29947
Cards
Entrez_Gene (NCBI)TRAK1    trafficking kinesin protein 1
AliasesDEE68; EIEE68; MILT1; OIP106
GeneCards (Weizmann)TRAK1
Ensembl hg19 (Hinxton)ENSG00000182606 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182606 [Gene_View]  ENSG00000182606 [Sequence]  chr3:42160193-42212617 [Contig_View]  TRAK1 [Vega]
ICGC DataPortalENSG00000182606
TCGA cBioPortalTRAK1
AceView (NCBI)TRAK1
Genatlas (Paris)TRAK1
SOURCE (Princeton)TRAK1
Genetics Home Reference (NIH)TRAK1
Genomic and cartography
GoldenPath hg38 (UCSC)TRAK1  -     chr3:42160193-42212617 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAK1  -     3p22.1   [Description]    (hg19-Feb_2009)
GoldenPathTRAK1 - 3p22.1 [CytoView hg19]  TRAK1 - 3p22.1 [CytoView hg38]
ImmunoBaseENSG00000182606
Genome Data Viewer NCBITRAK1 [Mapview hg19]  
OMIM608112   618201   
Gene and transcription
Genbank (Entrez)AA534633 AB028965 AK000754 AK023962 AK294221
RefSeq transcript (Entrez)NM_001042646 NM_001265608 NM_001265609 NM_001265610 NM_001349245 NM_001349246 NM_001349247 NM_001349248 NM_001349249 NM_014965
Consensus coding sequences : CCDS (NCBI)TRAK1
Gene ExpressionTRAK1 [ NCBI-GEO ]   TRAK1 [ EBI - ARRAY_EXPRESS ]   TRAK1 [ SEEK ]   TRAK1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAK1 [ Firebrowse - Broad ]
GenevisibleExpression of TRAK1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22906
GTEX Portal (Tissue expression)TRAK1
Human Protein AtlasENSG00000182606-TRAK1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPV9
PhosPhoSitePlusQ9UPV9
Domains : Interpro (EBI)HAP1_N    TRAK1/2_C   
Domain families : Pfam (Sanger)HAP1_N (PF04849)    Milton (PF12448)   
Domain families : Pfam (NCBI)pfam04849    pfam12448   
Conserved Domain (NCBI)TRAK1
SuperfamilyQ9UPV9
AlphaFold pdb e-kbQ9UPV9   
Human Protein Atlas [tissue]ENSG00000182606-TRAK1 [tissue]
HPRD09732
Protein Interaction databases
DIP (DOE-UCLA)Q9UPV9
IntAct (EBI)Q9UPV9
BioGRIDTRAK1
STRING (EMBL)TRAK1
ZODIACTRAK1
Ontologies - Pathways
QuickGOQ9UPV9
Ontology : AmiGOsignaling receptor binding  protein binding  nucleus  cytoplasm  mitochondrion  mitochondrion  early endosome  cell cortex  regulation of transcription by RNA polymerase II  protein O-linked glycosylation  protein targeting  protein targeting  endosome to lysosome transport  endosome to lysosome transport  myosin binding  neurogenesis  dendrite  TPR domain binding  cytoplasmic vesicle  mitochondrial membrane  axonal growth cone  vesicle transport along microtubule  mitochondrion distribution  perinuclear region of cytoplasm  dendrite morphogenesis  positive regulation of axonogenesis  GABA receptor binding  anterograde axonal transport of mitochondrion  axon cytoplasm  
Ontology : EGO-EBIsignaling receptor binding  protein binding  nucleus  cytoplasm  mitochondrion  mitochondrion  early endosome  cell cortex  regulation of transcription by RNA polymerase II  protein O-linked glycosylation  protein targeting  protein targeting  endosome to lysosome transport  endosome to lysosome transport  myosin binding  neurogenesis  dendrite  TPR domain binding  cytoplasmic vesicle  mitochondrial membrane  axonal growth cone  vesicle transport along microtubule  mitochondrion distribution  perinuclear region of cytoplasm  dendrite morphogenesis  positive regulation of axonogenesis  GABA receptor binding  anterograde axonal transport of mitochondrion  axon cytoplasm  
NDEx NetworkTRAK1
Atlas of Cancer Signalling NetworkTRAK1
Wikipedia pathwaysTRAK1
Orthology - Evolution
OrthoDB22906
GeneTree (enSembl)ENSG00000182606
Phylogenetic Trees/Animal Genes : TreeFamTRAK1
Homologs : HomoloGeneTRAK1
Homology/Alignments : Family Browser (UCSC)TRAK1
Gene fusions - Rearrangements
Fusion : QuiverTRAK1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAK1
dbVarTRAK1
ClinVarTRAK1
MonarchTRAK1
1000_GenomesTRAK1 
Exome Variant ServerTRAK1
GNOMAD BrowserENSG00000182606
Varsome BrowserTRAK1
ACMGTRAK1 variants
VarityQ9UPV9
Genomic Variants (DGV)TRAK1 [DGVbeta]
DECIPHERTRAK1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAK1 
Mutations
ICGC Data PortalTRAK1 
TCGA Data PortalTRAK1 
Broad Tumor PortalTRAK1
OASIS PortalTRAK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAK1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAK1
Mutations and Diseases : HGMDTRAK1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRAK1
DgiDB (Drug Gene Interaction Database)TRAK1
DoCM (Curated mutations)TRAK1
CIViC (Clinical Interpretations of Variants in Cancer)TRAK1
Cancer3DTRAK1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608112    618201   
Orphanet
DisGeNETTRAK1
MedgenTRAK1
Genetic Testing Registry TRAK1
NextProtQ9UPV9 [Medical]
GENETestsTRAK1
Target ValidationTRAK1
Huge Navigator TRAK1 [HugePedia]
ClinGenTRAK1
Clinical trials, drugs, therapy
MyCancerGenomeTRAK1
Protein Interactions : CTDTRAK1
Pharm GKB GenePA128394593
PharosQ9UPV9
Clinical trialTRAK1
Miscellaneous
canSAR (ICR)TRAK1
HarmonizomeTRAK1
DataMed IndexTRAK1
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRAK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:10 CEST 2021

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