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TRAK1 (trafficking kinesin protein 1)

Identity

Alias_namestrafficking protein
Alias_symbol (synonym)OIP106
KIAA1042
MILT1
Other alias
HGNC (Hugo) TRAK1
LocusID (NCBI) 22906
Atlas_Id 50704
Location 3p22.1  [Link to chromosome band 3p22]
Location_base_pair Starts at 42091254 and ends at 42225890 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APEH (3p21.31) / TRAK1 (3p22.1)TRAK1 (3p22.1) / ALDOC (17q11.2)TRAK1 (3p22.1) / ARL13B (3q11.1)
TRAK1 (3p22.1) / HES6 (2q37.3)TRAK1 (3p22.1) / PPARGC1B (5q32)TRAK1 (3p22.1) / RAF1 (3p25.2)
TRAK1 (3p22.1) / TRAK1 (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAK1   29947
Cards
Entrez_Gene (NCBI)TRAK1  22906  trafficking kinesin protein 1
AliasesMILT1; OIP106
GeneCards (Weizmann)TRAK1
Ensembl hg19 (Hinxton)ENSG00000182606 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182606 [Gene_View]  chr3:42091254-42225890 [Contig_View]  TRAK1 [Vega]
ICGC DataPortalENSG00000182606
TCGA cBioPortalTRAK1
AceView (NCBI)TRAK1
Genatlas (Paris)TRAK1
WikiGenes22906
SOURCE (Princeton)TRAK1
Genetics Home Reference (NIH)TRAK1
Genomic and cartography
GoldenPath hg38 (UCSC)TRAK1  -     chr3:42091254-42225890 +  3p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAK1  -     3p22.1   [Description]    (hg19-Feb_2009)
EnsemblTRAK1 - 3p22.1 [CytoView hg19]  TRAK1 - 3p22.1 [CytoView hg38]
Mapping of homologs : NCBITRAK1 [Mapview hg19]  TRAK1 [Mapview hg38]
OMIM608112   
Gene and transcription
Genbank (Entrez)AA534633 AB028965 AK000754 AK023962 AK294221
RefSeq transcript (Entrez)NM_001042646 NM_001265608 NM_001265609 NM_001265610 NM_001349245 NM_001349246 NM_001349247 NM_001349248 NM_001349249 NM_014965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAK1
Cluster EST : UnigeneHs.535711 [ NCBI ]
CGAP (NCI)Hs.535711
Alternative Splicing GalleryENSG00000182606
Gene ExpressionTRAK1 [ NCBI-GEO ]   TRAK1 [ EBI - ARRAY_EXPRESS ]   TRAK1 [ SEEK ]   TRAK1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22906
GTEX Portal (Tissue expression)TRAK1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPV9
Splice isoforms : SwissVarQ9UPV9
PhosPhoSitePlusQ9UPV9
Domains : Interpro (EBI)HAP1_N    Traffickng_kinesin-bd_prot_dom   
Domain families : Pfam (Sanger)HAP1_N (PF04849)    Milton (PF12448)   
Domain families : Pfam (NCBI)pfam04849    pfam12448   
Conserved Domain (NCBI)TRAK1
DMDM Disease mutations22906
Blocks (Seattle)TRAK1
SuperfamilyQ9UPV9
Human Protein AtlasENSG00000182606
Peptide AtlasQ9UPV9
HPRD09732
IPIIPI00444592   IPI00444595   IPI01014537   IPI00925176   IPI00922931   IPI00927380   IPI00925998   IPI00924972   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPV9
IntAct (EBI)Q9UPV9
FunCoupENSG00000182606
BioGRIDTRAK1
STRING (EMBL)TRAK1
ZODIACTRAK1
Ontologies - Pathways
QuickGOQ9UPV9
Ontology : AmiGOprotein binding  nucleus  cytoplasm  mitochondrion  early endosome  regulation of transcription from RNA polymerase II promoter  protein O-linked glycosylation  protein targeting  endosome to lysosome transport  GABA receptor binding  anterograde axonal transport of mitochondrion  axon cytoplasm  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  mitochondrion  early endosome  regulation of transcription from RNA polymerase II promoter  protein O-linked glycosylation  protein targeting  endosome to lysosome transport  GABA receptor binding  anterograde axonal transport of mitochondrion  axon cytoplasm  
NDEx NetworkTRAK1
Atlas of Cancer Signalling NetworkTRAK1
Wikipedia pathwaysTRAK1
Orthology - Evolution
OrthoDB22906
GeneTree (enSembl)ENSG00000182606
Phylogenetic Trees/Animal Genes : TreeFamTRAK1
HOVERGENQ9UPV9
HOGENOMQ9UPV9
Homologs : HomoloGeneTRAK1
Homology/Alignments : Family Browser (UCSC)TRAK1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAK1
dbVarTRAK1
ClinVarTRAK1
1000_GenomesTRAK1 
Exome Variant ServerTRAK1
ExAC (Exome Aggregation Consortium)TRAK1 (select the gene name)
Genetic variants : HAPMAP22906
Genomic Variants (DGV)TRAK1 [DGVbeta]
DECIPHERTRAK1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAK1 
Mutations
ICGC Data PortalTRAK1 
TCGA Data PortalTRAK1 
Broad Tumor PortalTRAK1
OASIS PortalTRAK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAK1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAK1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAK1
DgiDB (Drug Gene Interaction Database)TRAK1
DoCM (Curated mutations)TRAK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAK1 (select a term)
intoGenTRAK1
Cancer3DTRAK1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608112   
Orphanet
MedgenTRAK1
Genetic Testing Registry TRAK1
NextProtQ9UPV9 [Medical]
TSGene22906
GENETestsTRAK1
Huge Navigator TRAK1 [HugePedia]
snp3D : Map Gene to Disease22906
BioCentury BCIQTRAK1
ClinGenTRAK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22906
Chemical/Pharm GKB GenePA128394593
Clinical trialTRAK1
Miscellaneous
canSAR (ICR)TRAK1 (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAK1
EVEXTRAK1
GoPubMedTRAK1
iHOPTRAK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:42:04 CEST 2017

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