Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRAK2 (trafficking protein, kinesin binding 2)

Identity

Alias_namesALS2CR3
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 3
trafficking protein, kinesin binding 2
Alias_symbol (synonym)CALS-C
KIAA0549
GRIF-1
OIP98
MILT2
Other aliasGRIF1
HGNC (Hugo) TRAK2
LocusID (NCBI) 66008
Atlas_Id 75103
Location 2q33.1  [Link to chromosome band 2q33]
Location_base_pair Starts at 202241930 and ends at 202316319 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TRAK2 (2q33.1) / CD68 (17p13.1)TRAK2 (2q33.1) / GHRLOS (3p25.3)TRAK2 (2q33.1) / SPAG11B (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAK2   13206
Cards
Entrez_Gene (NCBI)TRAK2  66008  trafficking protein, kinesin binding 2
AliasesALS2CR3; CALS-C; GRIF-1; GRIF1; 
MILT2; OIP98
GeneCards (Weizmann)TRAK2
Ensembl hg19 (Hinxton)ENSG00000115993 [Gene_View]  chr2:202241930-202316319 [Contig_View]  TRAK2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000115993 [Gene_View]  chr2:202241930-202316319 [Contig_View]  TRAK2 [Vega]
ICGC DataPortalENSG00000115993
TCGA cBioPortalTRAK2
AceView (NCBI)TRAK2
Genatlas (Paris)TRAK2
WikiGenes66008
SOURCE (Princeton)TRAK2
Genetics Home Reference (NIH)TRAK2
Genomic and cartography
GoldenPath hg19 (UCSC)TRAK2  -     chr2:202241930-202316319 -  2q33.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAK2  -     2q33.1   [Description]    (hg38-Dec_2013)
EnsemblTRAK2 - 2q33.1 [CytoView hg19]  TRAK2 - 2q33.1 [CytoView hg38]
Mapping of homologs : NCBITRAK2 [Mapview hg19]  TRAK2 [Mapview hg38]
OMIM607334   
Gene and transcription
Genbank (Entrez)AB011121 AB038951 AK054763 AK314384 AL832573
RefSeq transcript (Entrez)NM_015049
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)TRAK2
Cluster EST : UnigeneHs.152774 [ NCBI ]
CGAP (NCI)Hs.152774
Alternative Splicing GalleryENSG00000115993
Gene ExpressionTRAK2 [ NCBI-GEO ]   TRAK2 [ EBI - ARRAY_EXPRESS ]   TRAK2 [ SEEK ]   TRAK2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAK2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)66008
GTEX Portal (Tissue expression)TRAK2
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60296   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60296  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60296
Splice isoforms : SwissVarO60296
PhosPhoSitePlusO60296
Domains : Interpro (EBI)HAP1_N    Traffickng_kinesin-bd_prot_dom   
Domain families : Pfam (Sanger)HAP1_N (PF04849)    Milton (PF12448)   
Domain families : Pfam (NCBI)pfam04849    pfam12448   
Conserved Domain (NCBI)TRAK2
DMDM Disease mutations66008
Blocks (Seattle)TRAK2
SuperfamilyO60296
Human Protein AtlasENSG00000115993
Peptide AtlasO60296
HPRD09547
IPIIPI00297257   IPI01014313   IPI00925755   IPI00927859   
Protein Interaction databases
DIP (DOE-UCLA)O60296
IntAct (EBI)O60296
FunCoupENSG00000115993
BioGRIDTRAK2
STRING (EMBL)TRAK2
ZODIACTRAK2
Ontologies - Pathways
QuickGOO60296
Ontology : AmiGOreceptor binding  protein binding  nucleus  cytoplasm  mitochondrion  early endosome  plasma membrane  regulation of transcription from RNA polymerase II promoter  protein O-linked glycosylation  protein targeting  enzyme binding  GABA receptor binding  
Ontology : EGO-EBIreceptor binding  protein binding  nucleus  cytoplasm  mitochondrion  early endosome  plasma membrane  regulation of transcription from RNA polymerase II promoter  protein O-linked glycosylation  protein targeting  enzyme binding  GABA receptor binding  
Pathways : KEGGGABAergic synapse   
NDEx NetworkTRAK2
Atlas of Cancer Signalling NetworkTRAK2
Wikipedia pathwaysTRAK2
Orthology - Evolution
OrthoDB66008
GeneTree (enSembl)ENSG00000115993
Phylogenetic Trees/Animal Genes : TreeFamTRAK2
HOVERGENO60296
HOGENOMO60296
Homologs : HomoloGeneTRAK2
Homology/Alignments : Family Browser (UCSC)TRAK2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAK2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAK2
dbVarTRAK2
ClinVarTRAK2
1000_GenomesTRAK2 
Exome Variant ServerTRAK2
ExAC (Exome Aggregation Consortium)TRAK2 (select the gene name)
Genetic variants : HAPMAP66008
Genomic Variants (DGV)TRAK2 [DGVbeta]
DECIPHER (Syndromes)2:202241930-202316319  ENSG00000115993
CONAN: Copy Number AnalysisTRAK2 
Mutations
ICGC Data PortalTRAK2 
TCGA Data PortalTRAK2 
Broad Tumor PortalTRAK2
OASIS PortalTRAK2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAK2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAK2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAK2
DgiDB (Drug Gene Interaction Database)TRAK2
DoCM (Curated mutations)TRAK2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAK2 (select a term)
intoGenTRAK2
Cancer3DTRAK2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607334   
Orphanet
MedgenTRAK2
Genetic Testing Registry TRAK2
NextProtO60296 [Medical]
TSGene66008
GENETestsTRAK2
Huge Navigator TRAK2 [HugePedia]
snp3D : Map Gene to Disease66008
BioCentury BCIQTRAK2
ClinGenTRAK2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD66008
Chemical/Pharm GKB GenePA24744
Clinical trialTRAK2
Miscellaneous
canSAR (ICR)TRAK2 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAK2
EVEXTRAK2
GoPubMedTRAK2
iHOPTRAK2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:30 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.