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TRAM1L1 (translocation associated membrane protein 1-like 1)

Identity

Alias_symbol (synonym)MGC26568
Other alias-
HGNC (Hugo) TRAM1L1
LocusID (NCBI) 133022
Atlas_Id 42690
Location 4q26  [Link to chromosome band 4q26]
Location_base_pair Starts at 118004710 and ends at 118006736 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAM1L1   28371
Cards
Entrez_Gene (NCBI)TRAM1L1  133022  translocation associated membrane protein 1-like 1
Aliases
GeneCards (Weizmann)TRAM1L1
Ensembl hg19 (Hinxton)ENSG00000174599 [Gene_View]  chr4:118004710-118006736 [Contig_View]  TRAM1L1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174599 [Gene_View]  chr4:118004710-118006736 [Contig_View]  TRAM1L1 [Vega]
ICGC DataPortalENSG00000174599
TCGA cBioPortalTRAM1L1
AceView (NCBI)TRAM1L1
Genatlas (Paris)TRAM1L1
WikiGenes133022
SOURCE (Princeton)TRAM1L1
Genetics Home Reference (NIH)TRAM1L1
Genomic and cartography
GoldenPath hg19 (UCSC)TRAM1L1  -     chr4:118004710-118006736 -  4q26   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAM1L1  -     4q26   [Description]    (hg38-Dec_2013)
EnsemblTRAM1L1 - 4q26 [CytoView hg19]  TRAM1L1 - 4q26 [CytoView hg38]
Mapping of homologs : NCBITRAM1L1 [Mapview hg19]  TRAM1L1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074617 BC030831 BX423039 CA415689 DB099839
RefSeq transcript (Entrez)NM_152402
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)TRAM1L1
Cluster EST : UnigeneHs.570737 [ NCBI ]
CGAP (NCI)Hs.570737
Alternative Splicing GalleryENSG00000174599
Gene ExpressionTRAM1L1 [ NCBI-GEO ]   TRAM1L1 [ EBI - ARRAY_EXPRESS ]   TRAM1L1 [ SEEK ]   TRAM1L1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAM1L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)133022
GTEX Portal (Tissue expression)TRAM1L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N609   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N609  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N609
Splice isoforms : SwissVarQ8N609
PhosPhoSitePlusQ8N609
Domaine pattern : Prosite (Expaxy)TLC (PS50922)   
Domains : Interpro (EBI)TLC-dom    TRAM1    Translocation_assoc_membrane   
Domain families : Pfam (Sanger)TRAM1 (PF08390)    TRAM_LAG1_CLN8 (PF03798)   
Domain families : Pfam (NCBI)pfam08390    pfam03798   
Domain families : Smart (EMBL)TLC (SM00724)  
Conserved Domain (NCBI)TRAM1L1
DMDM Disease mutations133022
Blocks (Seattle)TRAM1L1
SuperfamilyQ8N609
Human Protein AtlasENSG00000174599
Peptide AtlasQ8N609
HPRD11643
IPIIPI00296199   
Protein Interaction databases
DIP (DOE-UCLA)Q8N609
IntAct (EBI)Q8N609
FunCoupENSG00000174599
BioGRIDTRAM1L1
STRING (EMBL)TRAM1L1
ZODIACTRAM1L1
Ontologies - Pathways
QuickGOQ8N609
Ontology : AmiGOendoplasmic reticulum membrane  rough endoplasmic reticulum  cotranslational protein targeting to membrane  integral component of membrane  
Ontology : EGO-EBIendoplasmic reticulum membrane  rough endoplasmic reticulum  cotranslational protein targeting to membrane  integral component of membrane  
NDEx NetworkTRAM1L1
Atlas of Cancer Signalling NetworkTRAM1L1
Wikipedia pathwaysTRAM1L1
Orthology - Evolution
OrthoDB133022
GeneTree (enSembl)ENSG00000174599
Phylogenetic Trees/Animal Genes : TreeFamTRAM1L1
HOVERGENQ8N609
HOGENOMQ8N609
Homologs : HomoloGeneTRAM1L1
Homology/Alignments : Family Browser (UCSC)TRAM1L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAM1L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAM1L1
dbVarTRAM1L1
ClinVarTRAM1L1
1000_GenomesTRAM1L1 
Exome Variant ServerTRAM1L1
ExAC (Exome Aggregation Consortium)TRAM1L1 (select the gene name)
Genetic variants : HAPMAP133022
Genomic Variants (DGV)TRAM1L1 [DGVbeta]
DECIPHER (Syndromes)4:118004710-118006736  ENSG00000174599
CONAN: Copy Number AnalysisTRAM1L1 
Mutations
ICGC Data PortalTRAM1L1 
TCGA Data PortalTRAM1L1 
Broad Tumor PortalTRAM1L1
OASIS PortalTRAM1L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAM1L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAM1L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAM1L1
DgiDB (Drug Gene Interaction Database)TRAM1L1
DoCM (Curated mutations)TRAM1L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAM1L1 (select a term)
intoGenTRAM1L1
Cancer3DTRAM1L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRAM1L1
Genetic Testing Registry TRAM1L1
NextProtQ8N609 [Medical]
TSGene133022
GENETestsTRAM1L1
Huge Navigator TRAM1L1 [HugePedia]
snp3D : Map Gene to Disease133022
BioCentury BCIQTRAM1L1
ClinGenTRAM1L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD133022
Chemical/Pharm GKB GenePA134911361
Clinical trialTRAM1L1
Miscellaneous
canSAR (ICR)TRAM1L1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAM1L1
EVEXTRAM1L1
GoPubMedTRAM1L1
iHOPTRAM1L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:20 CEST 2017

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