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TRANK1 (tetratricopeptide repeat and ankyrin repeat containing 1)

Identity

Alias_symbol (synonym)LBA1
KIAA0342
Other alias
HGNC (Hugo) TRANK1
LocusID (NCBI) 9881
Atlas_Id 51292
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 36826817 and ends at 36945057 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CD36 (7q21.11) / TRANK1 (3p22.2)PITPNA (17p13.3) / TRANK1 (3p22.2)TRANK1 (3p22.2) / ULK4 (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRANK1   29011
Cards
Entrez_Gene (NCBI)TRANK1  9881  tetratricopeptide repeat and ankyrin repeat containing 1
AliasesLBA1
GeneCards (Weizmann)TRANK1
Ensembl hg19 (Hinxton)ENSG00000168016 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168016 [Gene_View]  chr3:36826817-36945057 [Contig_View]  TRANK1 [Vega]
ICGC DataPortalENSG00000168016
TCGA cBioPortalTRANK1
AceView (NCBI)TRANK1
Genatlas (Paris)TRANK1
WikiGenes9881
SOURCE (Princeton)TRANK1
Genetics Home Reference (NIH)TRANK1
Genomic and cartography
GoldenPath hg38 (UCSC)TRANK1  -     chr3:36826817-36945057 -  3p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRANK1  -     3p22.2   [Description]    (hg19-Feb_2009)
EnsemblTRANK1 - 3p22.2 [CytoView hg19]  TRANK1 - 3p22.2 [CytoView hg38]
Mapping of homologs : NCBITRANK1 [Mapview hg19]  TRANK1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB002340 AK096678 BG750754 BG960452 BQ024165
RefSeq transcript (Entrez)NM_001329998 NM_014831
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRANK1
Cluster EST : UnigeneHs.170999 [ NCBI ]
CGAP (NCI)Hs.170999
Alternative Splicing GalleryENSG00000168016
Gene ExpressionTRANK1 [ NCBI-GEO ]   TRANK1 [ EBI - ARRAY_EXPRESS ]   TRANK1 [ SEEK ]   TRANK1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRANK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9881
GTEX Portal (Tissue expression)TRANK1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15050   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15050  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15050
Splice isoforms : SwissVarO15050
PhosPhoSitePlusO15050
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    P-loop_NTPase    TPR-contain_dom    TPR-like_helical_dom    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ANK (SM00248)  TPR (SM00028)  
Conserved Domain (NCBI)TRANK1
DMDM Disease mutations9881
Blocks (Seattle)TRANK1
SuperfamilyO15050
Human Protein AtlasENSG00000168016
Peptide AtlasO15050
IPIIPI00847543   IPI00927835   
Protein Interaction databases
DIP (DOE-UCLA)O15050
IntAct (EBI)O15050
FunCoupENSG00000168016
BioGRIDTRANK1
STRING (EMBL)TRANK1
ZODIACTRANK1
Ontologies - Pathways
QuickGOO15050
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkTRANK1
Atlas of Cancer Signalling NetworkTRANK1
Wikipedia pathwaysTRANK1
Orthology - Evolution
OrthoDB9881
GeneTree (enSembl)ENSG00000168016
Phylogenetic Trees/Animal Genes : TreeFamTRANK1
HOVERGENO15050
HOGENOMO15050
Homologs : HomoloGeneTRANK1
Homology/Alignments : Family Browser (UCSC)TRANK1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRANK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRANK1
dbVarTRANK1
ClinVarTRANK1
1000_GenomesTRANK1 
Exome Variant ServerTRANK1
ExAC (Exome Aggregation Consortium)TRANK1 (select the gene name)
Genetic variants : HAPMAP9881
Genomic Variants (DGV)TRANK1 [DGVbeta]
DECIPHERTRANK1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRANK1 
Mutations
ICGC Data PortalTRANK1 
TCGA Data PortalTRANK1 
Broad Tumor PortalTRANK1
OASIS PortalTRANK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRANK1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRANK1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRANK1
DgiDB (Drug Gene Interaction Database)TRANK1
DoCM (Curated mutations)TRANK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRANK1 (select a term)
intoGenTRANK1
Cancer3DTRANK1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRANK1
Genetic Testing Registry TRANK1
NextProtO15050 [Medical]
TSGene9881
GENETestsTRANK1
Target ValidationTRANK1
Huge Navigator TRANK1 [HugePedia]
snp3D : Map Gene to Disease9881
BioCentury BCIQTRANK1
ClinGenTRANK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9881
Chemical/Pharm GKB GenePA165698606
Clinical trialTRANK1
Miscellaneous
canSAR (ICR)TRANK1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRANK1
EVEXTRANK1
GoPubMedTRANK1
iHOPTRANK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:17:36 CEST 2017

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