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TRAPPC1 (trafficking protein particle complex 1)

Identity

Alias_symbol (synonym)MUM2
BET5
Other alias
HGNC (Hugo) TRAPPC1
LocusID (NCBI) 58485
Atlas_Id 75105
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7833663 and ends at 7835317 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TRAPPC1 (17p13.1) / LOC100507412 (-)TRAPPC1 (17p13.1) / PRKCE (2p21)TRAPPC1 (17p13.1) / QARS (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC1   19894
Cards
Entrez_Gene (NCBI)TRAPPC1  58485  trafficking protein particle complex 1
AliasesBET5; MUM2
GeneCards (Weizmann)TRAPPC1
Ensembl hg19 (Hinxton)ENSG00000170043 [Gene_View]  chr17:7833663-7835317 [Contig_View]  TRAPPC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170043 [Gene_View]  chr17:7833663-7835317 [Contig_View]  TRAPPC1 [Vega]
ICGC DataPortalENSG00000170043
TCGA cBioPortalTRAPPC1
AceView (NCBI)TRAPPC1
Genatlas (Paris)TRAPPC1
WikiGenes58485
SOURCE (Princeton)TRAPPC1
Genetics Home Reference (NIH)TRAPPC1
Genomic and cartography
GoldenPath hg19 (UCSC)TRAPPC1  -     chr17:7833663-7835317 -  17p13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAPPC1  -     17p13.1   [Description]    (hg38-Dec_2013)
EnsemblTRAPPC1 - 17p13.1 [CytoView hg19]  TRAPPC1 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBITRAPPC1 [Mapview hg19]  TRAPPC1 [Mapview hg38]
OMIM610969   
Gene and transcription
Genbank (Entrez)AK314038 AW964727 BC025413 BC032717 BI457771
RefSeq transcript (Entrez)NM_001166621 NM_021210
RefSeq genomic (Entrez)NC_000017 NC_018928 NG_029754 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)TRAPPC1
Cluster EST : UnigeneHs.24379 [ NCBI ]
CGAP (NCI)Hs.24379
Alternative Splicing GalleryENSG00000170043
Gene ExpressionTRAPPC1 [ NCBI-GEO ]   TRAPPC1 [ EBI - ARRAY_EXPRESS ]   TRAPPC1 [ SEEK ]   TRAPPC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58485
GTEX Portal (Tissue expression)TRAPPC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y5R8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y5R8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y5R8
Splice isoforms : SwissVarQ9Y5R8
PhosPhoSitePlusQ9Y5R8
Domains : Interpro (EBI)Longin-like_dom    Sybindin   
Domain families : Pfam (Sanger)Sybindin (PF04099)   
Domain families : Pfam (NCBI)pfam04099   
Conserved Domain (NCBI)TRAPPC1
DMDM Disease mutations58485
Blocks (Seattle)TRAPPC1
SuperfamilyQ9Y5R8
Human Protein AtlasENSG00000170043
Peptide AtlasQ9Y5R8
HPRD18219
IPIIPI00009654   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y5R8
IntAct (EBI)Q9Y5R8
FunCoupENSG00000170043
BioGRIDTRAPPC1
STRING (EMBL)TRAPPC1
ZODIACTRAPPC1
Ontologies - Pathways
QuickGOQ9Y5R8
Ontology : AmiGOendoplasmic reticulum  Golgi apparatus  cis-Golgi network  ER to Golgi vesicle-mediated transport  Rab guanyl-nucleotide exchange factor activity  TRAPP complex  positive regulation of GTPase activity  
Ontology : EGO-EBIendoplasmic reticulum  Golgi apparatus  cis-Golgi network  ER to Golgi vesicle-mediated transport  Rab guanyl-nucleotide exchange factor activity  TRAPP complex  positive regulation of GTPase activity  
NDEx NetworkTRAPPC1
Atlas of Cancer Signalling NetworkTRAPPC1
Wikipedia pathwaysTRAPPC1
Orthology - Evolution
OrthoDB58485
GeneTree (enSembl)ENSG00000170043
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC1
HOVERGENQ9Y5R8
HOGENOMQ9Y5R8
Homologs : HomoloGeneTRAPPC1
Homology/Alignments : Family Browser (UCSC)TRAPPC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC1
dbVarTRAPPC1
ClinVarTRAPPC1
1000_GenomesTRAPPC1 
Exome Variant ServerTRAPPC1
ExAC (Exome Aggregation Consortium)TRAPPC1 (select the gene name)
Genetic variants : HAPMAP58485
Genomic Variants (DGV)TRAPPC1 [DGVbeta]
DECIPHER (Syndromes)17:7833663-7835317  ENSG00000170043
CONAN: Copy Number AnalysisTRAPPC1 
Mutations
ICGC Data PortalTRAPPC1 
TCGA Data PortalTRAPPC1 
Broad Tumor PortalTRAPPC1
OASIS PortalTRAPPC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC1
DgiDB (Drug Gene Interaction Database)TRAPPC1
DoCM (Curated mutations)TRAPPC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC1 (select a term)
intoGenTRAPPC1
Cancer3DTRAPPC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610969   
Orphanet
MedgenTRAPPC1
Genetic Testing Registry TRAPPC1
NextProtQ9Y5R8 [Medical]
TSGene58485
GENETestsTRAPPC1
Huge Navigator TRAPPC1 [HugePedia]
snp3D : Map Gene to Disease58485
BioCentury BCIQTRAPPC1
ClinGenTRAPPC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58485
Chemical/Pharm GKB GenePA134988492
Clinical trialTRAPPC1
Miscellaneous
canSAR (ICR)TRAPPC1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC1
EVEXTRAPPC1
GoPubMedTRAPPC1
iHOPTRAPPC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:30 CET 2017

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