Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRAPPC10 (trafficking protein particle complex 10)

Identity

Alias_namesTMEM1
transmembrane protein 1
Alias_symbol (synonym)EHOC-1
TRS130
Other aliasEHOC1
GT334
TRS30
HGNC (Hugo) TRAPPC10
LocusID (NCBI) 7109
Atlas_Id 54721
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 44012325 and ends at 44106551 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CABIN1 (22q11.23) / TRAPPC10 (21q22.3)PRELID3B (20q13.32) / TRAPPC10 (21q22.3)RRP1B (21q22.3) / TRAPPC10 (21q22.3)
TRAPPC10 (21q22.3) / BRWD1 (21q22.2)TRAPPC10 (21q22.3) / GCNT2 (6p24.3)TRAPPC10 (21q22.3) / GRID1 (10q23.1)
TRAPPC10 (21q22.3) / GRIK1 (21q21.3)TRAPPC10 (21q22.3) / TRAPPC10 (21q22.3)TRAPPC10 (21q22.3) / UBASH3A (21q22.3)
USP25 (21q21.1) / TRAPPC10 (21q22.3)SLMO2 TRAPPC10 21q22.3TRAPPC10 21q22.3 / BRWD1 21q22.2
TRAPPC10 21q22.3 / GRID1 10q23.1TRAPPC10 21q22.3 / GRIK1 21q21.3TRAPPC10 21q22.3 / UBASH3A 21q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC10   11868
Cards
Entrez_Gene (NCBI)TRAPPC10  7109  trafficking protein particle complex 10
AliasesEHOC-1; EHOC1; GT334; TMEM1; 
TRS130; TRS30
GeneCards (Weizmann)TRAPPC10
Ensembl hg19 (Hinxton)ENSG00000160218 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160218 [Gene_View]  chr21:44012325-44106551 [Contig_View]  TRAPPC10 [Vega]
ICGC DataPortalENSG00000160218
TCGA cBioPortalTRAPPC10
AceView (NCBI)TRAPPC10
Genatlas (Paris)TRAPPC10
WikiGenes7109
SOURCE (Princeton)TRAPPC10
Genetics Home Reference (NIH)TRAPPC10
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC10  -     chr21:44012325-44106551 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC10  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblTRAPPC10 - 21q22.3 [CytoView hg19]  TRAPPC10 - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBITRAPPC10 [Mapview hg19]  TRAPPC10 [Mapview hg38]
OMIM602103   
Gene and transcription
Genbank (Entrez)AK095010 AK295369 AK300912 AK303570 AL559301
RefSeq transcript (Entrez)NM_001001723 NM_003274
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAPPC10
Cluster EST : UnigeneHs.126221 [ NCBI ]
CGAP (NCI)Hs.126221
Alternative Splicing GalleryENSG00000160218
Gene ExpressionTRAPPC10 [ NCBI-GEO ]   TRAPPC10 [ EBI - ARRAY_EXPRESS ]   TRAPPC10 [ SEEK ]   TRAPPC10 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7109
GTEX Portal (Tissue expression)TRAPPC10
Protein : pattern, domain, 3D structure
UniProt/SwissProtP48553   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP48553  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP48553
Splice isoforms : SwissVarP48553
PhosPhoSitePlusP48553
Domains : Interpro (EBI)TRAPP_II_complex_TRAPPC10   
Domain families : Pfam (Sanger)TRAPPC10 (PF12584)   
Domain families : Pfam (NCBI)pfam12584   
Conserved Domain (NCBI)TRAPPC10
DMDM Disease mutations7109
Blocks (Seattle)TRAPPC10
SuperfamilyP48553
Human Protein AtlasENSG00000160218
Peptide AtlasP48553
HPRD03656
IPIIPI00298870   IPI01010016   IPI00552243   IPI00418693   IPI00917240   
Protein Interaction databases
DIP (DOE-UCLA)P48553
IntAct (EBI)P48553
FunCoupENSG00000160218
BioGRIDTRAPPC10
STRING (EMBL)TRAPPC10
ZODIACTRAPPC10
Ontologies - Pathways
QuickGOP48553
Ontology : AmiGOGolgi membrane  protein binding  cytosol  sodium ion transport  intra-Golgi vesicle-mediated transport  sodium ion transmembrane transporter activity  integral component of membrane  Rab guanyl-nucleotide exchange factor activity  early endosome to Golgi transport  sodium ion transmembrane transport  positive regulation of GTPase activity  COPII vesicle coating  membrane organization  TRAPPII protein complex  
Ontology : EGO-EBIGolgi membrane  protein binding  cytosol  sodium ion transport  intra-Golgi vesicle-mediated transport  sodium ion transmembrane transporter activity  integral component of membrane  Rab guanyl-nucleotide exchange factor activity  early endosome to Golgi transport  sodium ion transmembrane transport  positive regulation of GTPase activity  COPII vesicle coating  membrane organization  TRAPPII protein complex  
NDEx NetworkTRAPPC10
Atlas of Cancer Signalling NetworkTRAPPC10
Wikipedia pathwaysTRAPPC10
Orthology - Evolution
OrthoDB7109
GeneTree (enSembl)ENSG00000160218
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC10
HOVERGENP48553
HOGENOMP48553
Homologs : HomoloGeneTRAPPC10
Homology/Alignments : Family Browser (UCSC)TRAPPC10
Gene fusions - Rearrangements
Fusion : MitelmanSLMO2/21q22.3 [TRAPPC10/t(20;21)(q13;q22)]  
Fusion : MitelmanTRAPPC10/BRWD1 [21q22.3/21q22.2]  [t(21;21)(q22;q22)]  
Fusion : MitelmanTRAPPC10/GRID1 [21q22.3/10q23.1]  [t(10;21)(q23;q22)]  
Fusion : MitelmanTRAPPC10/GRIK1 [21q22.3/21q21.3]  [t(21;21)(q21;q22)]  
Fusion : MitelmanTRAPPC10/UBASH3A [21q22.3/21q22.3]  [t(21;21)(q22;q22)]  
Fusion : MitelmanUSP25/TRAPPC10 [21q21.1/21q22.3]  [t(21;21)(q21;q22)]  
Fusion: TCGASLMO2 TRAPPC10 21q22.3 LUAD
Fusion: TCGATRAPPC10 21q22.3 BRWD1 21q22.2 BRCA
Fusion: TCGATRAPPC10 21q22.3 GRID1 10q23.1 OV
Fusion: TCGATRAPPC10 21q22.3 GRIK1 21q21.3 LUAD
Fusion: TCGATRAPPC10 21q22.3 UBASH3A 21q22.3 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC10
dbVarTRAPPC10
ClinVarTRAPPC10
1000_GenomesTRAPPC10 
Exome Variant ServerTRAPPC10
ExAC (Exome Aggregation Consortium)TRAPPC10 (select the gene name)
Genetic variants : HAPMAP7109
Genomic Variants (DGV)TRAPPC10 [DGVbeta]
DECIPHERTRAPPC10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC10 
Mutations
ICGC Data PortalTRAPPC10 
TCGA Data PortalTRAPPC10 
Broad Tumor PortalTRAPPC10
OASIS PortalTRAPPC10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC10
DgiDB (Drug Gene Interaction Database)TRAPPC10
DoCM (Curated mutations)TRAPPC10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC10 (select a term)
intoGenTRAPPC10
Cancer3DTRAPPC10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602103   
Orphanet
MedgenTRAPPC10
Genetic Testing Registry TRAPPC10
NextProtP48553 [Medical]
TSGene7109
GENETestsTRAPPC10
Target ValidationTRAPPC10
Huge Navigator TRAPPC10 [HugePedia]
snp3D : Map Gene to Disease7109
BioCentury BCIQTRAPPC10
ClinGenTRAPPC10 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7109
Chemical/Pharm GKB GenePA162406870
Clinical trialTRAPPC10
Miscellaneous
canSAR (ICR)TRAPPC10 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC10
EVEXTRAPPC10
GoPubMedTRAPPC10
iHOPTRAPPC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:36:10 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.