Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TRAPPC11 (trafficking protein particle complex 11)

Identity

Alias_namesC4orf41
chromosome 4 open reading frame 41
Alias_symbol (synonym)FLJ12716
gry
foigr
Other aliasFOIGR
GRY
LGMD2S
HGNC (Hugo) TRAPPC11
LocusID (NCBI) 60684
Atlas_Id 75106
Location 4q35.1  [Link to chromosome band 4q35]
Location_base_pair Starts at 183659267 and ends at 183713594 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRAPPC11 (4q35.1) / TRAPPC11 (4q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC11   25751
Cards
Entrez_Gene (NCBI)TRAPPC11  60684  trafficking protein particle complex 11
AliasesC4orf41; FOIGR; GRY; LGMD2S
GeneCards (Weizmann)TRAPPC11
Ensembl hg19 (Hinxton)ENSG00000168538 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168538 [Gene_View]  chr4:183659267-183713594 [Contig_View]  TRAPPC11 [Vega]
ICGC DataPortalENSG00000168538
TCGA cBioPortalTRAPPC11
AceView (NCBI)TRAPPC11
Genatlas (Paris)TRAPPC11
WikiGenes60684
SOURCE (Princeton)TRAPPC11
Genetics Home Reference (NIH)TRAPPC11
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC11  -     chr4:183659267-183713594 +  4q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC11  -     4q35.1   [Description]    (hg19-Feb_2009)
EnsemblTRAPPC11 - 4q35.1 [CytoView hg19]  TRAPPC11 - 4q35.1 [CytoView hg38]
Mapping of homologs : NCBITRAPPC11 [Mapview hg19]  TRAPPC11 [Mapview hg38]
OMIM614138   615356   
Gene and transcription
Genbank (Entrez)AI034264 AK022778 AK023390 AK026992 AK090489
RefSeq transcript (Entrez)NM_021942 NM_199053
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAPPC11
Cluster EST : UnigeneHs.443240 [ NCBI ]
CGAP (NCI)Hs.443240
Alternative Splicing GalleryENSG00000168538
Gene ExpressionTRAPPC11 [ NCBI-GEO ]   TRAPPC11 [ EBI - ARRAY_EXPRESS ]   TRAPPC11 [ SEEK ]   TRAPPC11 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)60684
GTEX Portal (Tissue expression)TRAPPC11
Human Protein AtlasENSG00000168538-TRAPPC11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z392   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z392  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z392
Splice isoforms : SwissVarQ7Z392
PhosPhoSitePlusQ7Z392
Domains : Interpro (EBI)Foie-gras_1    TRAPPC11_C   
Domain families : Pfam (Sanger)Foie-gras_1 (PF11817)    Gryzun-like (PF12742)   
Domain families : Pfam (NCBI)pfam11817    pfam12742   
Conserved Domain (NCBI)TRAPPC11
DMDM Disease mutations60684
Blocks (Seattle)TRAPPC11
SuperfamilyQ7Z392
Human Protein Atlas [tissue]ENSG00000168538-TRAPPC11 [tissue]
Peptide AtlasQ7Z392
HPRD10968
IPIIPI00396048   IPI00375684   IPI00412941   IPI00940935   IPI00966100   IPI00964845   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z392
IntAct (EBI)Q7Z392
FunCoupENSG00000168538
BioGRIDTRAPPC11
STRING (EMBL)TRAPPC11
ZODIACTRAPPC11
Ontologies - Pathways
QuickGOQ7Z392
Ontology : AmiGOGolgi apparatus  cytosol  vesicle-mediated transport  Rab guanyl-nucleotide exchange factor activity  positive regulation of GTPase activity  membrane organization  
Ontology : EGO-EBIGolgi apparatus  cytosol  vesicle-mediated transport  Rab guanyl-nucleotide exchange factor activity  positive regulation of GTPase activity  membrane organization  
NDEx NetworkTRAPPC11
Atlas of Cancer Signalling NetworkTRAPPC11
Wikipedia pathwaysTRAPPC11
Orthology - Evolution
OrthoDB60684
GeneTree (enSembl)ENSG00000168538
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC11
HOVERGENQ7Z392
HOGENOMQ7Z392
Homologs : HomoloGeneTRAPPC11
Homology/Alignments : Family Browser (UCSC)TRAPPC11
Gene fusions - Rearrangements
Fusion: Tumor Portal TRAPPC11
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC11
dbVarTRAPPC11
ClinVarTRAPPC11
1000_GenomesTRAPPC11 
Exome Variant ServerTRAPPC11
ExAC (Exome Aggregation Consortium)ENSG00000168538
GNOMAD BrowserENSG00000168538
Genetic variants : HAPMAP60684
Genomic Variants (DGV)TRAPPC11 [DGVbeta]
DECIPHERTRAPPC11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC11 
Mutations
ICGC Data PortalTRAPPC11 
TCGA Data PortalTRAPPC11 
Broad Tumor PortalTRAPPC11
OASIS PortalTRAPPC11 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRAPPC11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC11
DgiDB (Drug Gene Interaction Database)TRAPPC11
DoCM (Curated mutations)TRAPPC11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC11 (select a term)
intoGenTRAPPC11
Cancer3DTRAPPC11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614138    615356   
Orphanet22434    22435   
MedgenTRAPPC11
Genetic Testing Registry TRAPPC11
NextProtQ7Z392 [Medical]
TSGene60684
GENETestsTRAPPC11
Target ValidationTRAPPC11
Huge Navigator TRAPPC11 [HugePedia]
snp3D : Map Gene to Disease60684
BioCentury BCIQTRAPPC11
ClinGenTRAPPC11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD60684
Chemical/Pharm GKB GenePA162379849
Clinical trialTRAPPC11
Miscellaneous
canSAR (ICR)TRAPPC11 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC11
EVEXTRAPPC11
GoPubMedTRAPPC11
iHOPTRAPPC11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:33:46 CET 2017

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