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TRAPPC12 (trafficking protein particle complex subunit 12)

Identity

Alias (NCBI)CGI-87
PEBAS
TTC-15
TTC15
HGNC (Hugo) TRAPPC12
HGNC Alias symbCGI-87
TTC-15
HGNC Previous nameTTC15
HGNC Previous nametetratricopeptide repeat domain 15
LocusID (NCBI) 51112
Atlas_Id 75107
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 3379694 and ends at 3479565 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TBC1D4 (13q22.2) / TRAPPC12 (2p25.3)TRAPPC12 (2p25.3) / ABL2 (1q25.2)TRAPPC12 (2p25.3) / FKBP5 (6p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRAPPC12   24284
Cards
Entrez_Gene (NCBI)TRAPPC12    trafficking protein particle complex subunit 12
AliasesCGI-87; PEBAS; TTC-15; TTC15
GeneCards (Weizmann)TRAPPC12
Ensembl hg19 (Hinxton)ENSG00000171853 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171853 [Gene_View]  ENSG00000171853 [Sequence]  chr2:3379694-3479565 [Contig_View]  TRAPPC12 [Vega]
ICGC DataPortalENSG00000171853
TCGA cBioPortalTRAPPC12
AceView (NCBI)TRAPPC12
Genatlas (Paris)TRAPPC12
SOURCE (Princeton)TRAPPC12
Genetics Home Reference (NIH)TRAPPC12
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC12  -     chr2:3379694-3479565 +  2p25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC12  -     2p25.3   [Description]    (hg19-Feb_2009)
GoldenPathTRAPPC12 - 2p25.3 [CytoView hg19]  TRAPPC12 - 2p25.3 [CytoView hg38]
ImmunoBaseENSG00000171853
Genome Data Viewer NCBITRAPPC12 [Mapview hg19]  
OMIM614139   617669   
Gene and transcription
Genbank (Entrez)AF151845 AI270453 AK094181 AK094194 AK094242
RefSeq transcript (Entrez)NM_001321102 NM_016030
Consensus coding sequences : CCDS (NCBI)TRAPPC12
Gene ExpressionTRAPPC12 [ NCBI-GEO ]   TRAPPC12 [ EBI - ARRAY_EXPRESS ]   TRAPPC12 [ SEEK ]   TRAPPC12 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC12 [ Firebrowse - Broad ]
GenevisibleExpression of TRAPPC12 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51112
GTEX Portal (Tissue expression)TRAPPC12
Human Protein AtlasENSG00000171853-TRAPPC12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVT3
PhosPhoSitePlusQ8WVT3
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TRAPPC12
SuperfamilyQ8WVT3
AlphaFold pdb e-kbQ8WVT3   
Human Protein Atlas [tissue]ENSG00000171853-TRAPPC12 [tissue]
HPRD15580
Protein Interaction databases
DIP (DOE-UCLA)Q8WVT3
IntAct (EBI)Q8WVT3
BioGRIDTRAPPC12
STRING (EMBL)TRAPPC12
ZODIACTRAPPC12
Ontologies - Pathways
QuickGOQ8WVT3
Ontology : AmiGOkinetochore  protein binding  nucleus  nucleoplasm  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  Golgi apparatus  cytosol  endoplasmic reticulum to Golgi vesicle-mediated transport  Golgi organization  TRAPP complex  TRAPP complex  perinuclear region of cytoplasm  metaphase plate congression  regulation of kinetochore assembly  positive regulation of protein localization to kinetochore  
Ontology : EGO-EBIkinetochore  protein binding  nucleus  nucleoplasm  endoplasmic reticulum-Golgi intermediate compartment  Golgi apparatus  Golgi apparatus  cytosol  endoplasmic reticulum to Golgi vesicle-mediated transport  Golgi organization  TRAPP complex  TRAPP complex  perinuclear region of cytoplasm  metaphase plate congression  regulation of kinetochore assembly  positive regulation of protein localization to kinetochore  
NDEx NetworkTRAPPC12
Atlas of Cancer Signalling NetworkTRAPPC12
Wikipedia pathwaysTRAPPC12
Orthology - Evolution
OrthoDB51112
GeneTree (enSembl)ENSG00000171853
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC12
Homologs : HomoloGeneTRAPPC12
Homology/Alignments : Family Browser (UCSC)TRAPPC12
Gene fusions - Rearrangements
Fusion : QuiverTRAPPC12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC12
dbVarTRAPPC12
ClinVarTRAPPC12
MonarchTRAPPC12
1000_GenomesTRAPPC12 
Exome Variant ServerTRAPPC12
GNOMAD BrowserENSG00000171853
Varsome BrowserTRAPPC12
ACMGTRAPPC12 variants
VarityQ8WVT3
Genomic Variants (DGV)TRAPPC12 [DGVbeta]
DECIPHERTRAPPC12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC12 
Mutations
ICGC Data PortalTRAPPC12 
TCGA Data PortalTRAPPC12 
Broad Tumor PortalTRAPPC12
OASIS PortalTRAPPC12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC12  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAPPC12
Mutations and Diseases : HGMDTRAPPC12
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRAPPC12
DgiDB (Drug Gene Interaction Database)TRAPPC12
DoCM (Curated mutations)TRAPPC12
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC12
Cancer3DTRAPPC12
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614139    617669   
Orphanet
DisGeNETTRAPPC12
MedgenTRAPPC12
Genetic Testing Registry TRAPPC12
NextProtQ8WVT3 [Medical]
GENETestsTRAPPC12
Target ValidationTRAPPC12
Huge Navigator TRAPPC12 [HugePedia]
ClinGenTRAPPC12
Clinical trials, drugs, therapy
MyCancerGenomeTRAPPC12
Protein Interactions : CTDTRAPPC12
Pharm GKB GenePA134944710
PharosQ8WVT3
Clinical trialTRAPPC12
Miscellaneous
canSAR (ICR)TRAPPC12
HarmonizomeTRAPPC12
DataMed IndexTRAPPC12
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRAPPC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:43 CEST 2021

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