Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRAPPC12 (trafficking protein particle complex 12)

Identity

Alias_namesTTC15
tetratricopeptide repeat domain 15
Alias_symbol (synonym)CGI-87
TTC-15
Other alias
HGNC (Hugo) TRAPPC12
LocusID (NCBI) 51112
Atlas_Id 75107
Location 2p25.3  [Link to chromosome band 2p25]
Location_base_pair Starts at 3383446 and ends at 3483342 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TBC1D4 (13q22.2) / TRAPPC12 (2p25.3)TRAPPC12 (2p25.3) / ABL2 (1q25.2)TRAPPC12 (2p25.3) / FKBP5 (6p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC12   24284
Cards
Entrez_Gene (NCBI)TRAPPC12  51112  trafficking protein particle complex 12
AliasesCGI-87; TTC-15; TTC15
GeneCards (Weizmann)TRAPPC12
Ensembl hg19 (Hinxton)ENSG00000171853 [Gene_View]  chr2:3383446-3483342 [Contig_View]  TRAPPC12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000171853 [Gene_View]  chr2:3383446-3483342 [Contig_View]  TRAPPC12 [Vega]
ICGC DataPortalENSG00000171853
TCGA cBioPortalTRAPPC12
AceView (NCBI)TRAPPC12
Genatlas (Paris)TRAPPC12
WikiGenes51112
SOURCE (Princeton)TRAPPC12
Genetics Home Reference (NIH)TRAPPC12
Genomic and cartography
GoldenPath hg19 (UCSC)TRAPPC12  -     chr2:3383446-3483342 +  2p25.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAPPC12  -     2p25.3   [Description]    (hg38-Dec_2013)
EnsemblTRAPPC12 - 2p25.3 [CytoView hg19]  TRAPPC12 - 2p25.3 [CytoView hg38]
Mapping of homologs : NCBITRAPPC12 [Mapview hg19]  TRAPPC12 [Mapview hg38]
OMIM614139   
Gene and transcription
Genbank (Entrez)AF151845 AK094181 AK094194 AK094242 AK098327
RefSeq transcript (Entrez)NM_016030
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005334 NT_187522 NW_004929296
Consensus coding sequences : CCDS (NCBI)TRAPPC12
Cluster EST : UnigeneHs.661278 [ NCBI ]
CGAP (NCI)Hs.661278
Alternative Splicing GalleryENSG00000171853
Gene ExpressionTRAPPC12 [ NCBI-GEO ]   TRAPPC12 [ EBI - ARRAY_EXPRESS ]   TRAPPC12 [ SEEK ]   TRAPPC12 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51112
GTEX Portal (Tissue expression)TRAPPC12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVT3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVT3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVT3
Splice isoforms : SwissVarQ8WVT3
PhosPhoSitePlusQ8WVT3
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom    TPR_1    TPR_repeat   
Domain families : Pfam (Sanger)TPR_1 (PF00515)   
Domain families : Pfam (NCBI)pfam00515   
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TRAPPC12
DMDM Disease mutations51112
Blocks (Seattle)TRAPPC12
SuperfamilyQ8WVT3
Human Protein AtlasENSG00000171853
Peptide AtlasQ8WVT3
HPRD15580
IPIIPI00152685   IPI00181009   IPI00893066   IPI00894074   IPI00894201   IPI00892871   IPI00892977   IPI00892602   IPI00892723   IPI00893337   IPI00893467   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVT3
IntAct (EBI)Q8WVT3
FunCoupENSG00000171853
BioGRIDTRAPPC12
STRING (EMBL)TRAPPC12
ZODIACTRAPPC12
Ontologies - Pathways
QuickGOQ8WVT3
Ontology : AmiGOendopeptidase activity  endoplasmic reticulum-Golgi intermediate compartment  proteolysis  vesicle-mediated transport  
Ontology : EGO-EBIendopeptidase activity  endoplasmic reticulum-Golgi intermediate compartment  proteolysis  vesicle-mediated transport  
NDEx NetworkTRAPPC12
Atlas of Cancer Signalling NetworkTRAPPC12
Wikipedia pathwaysTRAPPC12
Orthology - Evolution
OrthoDB51112
GeneTree (enSembl)ENSG00000171853
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC12
HOVERGENQ8WVT3
HOGENOMQ8WVT3
Homologs : HomoloGeneTRAPPC12
Homology/Alignments : Family Browser (UCSC)TRAPPC12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC12
dbVarTRAPPC12
ClinVarTRAPPC12
1000_GenomesTRAPPC12 
Exome Variant ServerTRAPPC12
ExAC (Exome Aggregation Consortium)TRAPPC12 (select the gene name)
Genetic variants : HAPMAP51112
Genomic Variants (DGV)TRAPPC12 [DGVbeta]
DECIPHER (Syndromes)2:3383446-3483342  ENSG00000171853
CONAN: Copy Number AnalysisTRAPPC12 
Mutations
ICGC Data PortalTRAPPC12 
TCGA Data PortalTRAPPC12 
Broad Tumor PortalTRAPPC12
OASIS PortalTRAPPC12 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRAPPC12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC12
DgiDB (Drug Gene Interaction Database)TRAPPC12
DoCM (Curated mutations)TRAPPC12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC12 (select a term)
intoGenTRAPPC12
Cancer3DTRAPPC12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614139   
Orphanet
MedgenTRAPPC12
Genetic Testing Registry TRAPPC12
NextProtQ8WVT3 [Medical]
TSGene51112
GENETestsTRAPPC12
Huge Navigator TRAPPC12 [HugePedia]
snp3D : Map Gene to Disease51112
BioCentury BCIQTRAPPC12
ClinGenTRAPPC12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51112
Chemical/Pharm GKB GenePA134944710
Clinical trialTRAPPC12
Miscellaneous
canSAR (ICR)TRAPPC12 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC12
EVEXTRAPPC12
GoPubMedTRAPPC12
iHOPTRAPPC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:31 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.