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TRAPPC13 (trafficking protein particle complex subunit 13)

Identity

Alias (NCBI)C5orf44
SHLD3
HGNC (Hugo) TRAPPC13
HGNC Alias symbFLJ13611
MGC48585
HGNC Alias nameTrs65-related
HGNC Previous nameC5orf44
HGNC Previous namechromosome 5 open reading frame 44
 trafficking protein particle complex 13
LocusID (NCBI) 80006
Atlas_Id 57476
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 65625027 and ends at 65666233 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACAD11 (3q22.1) / TRAPPC13 (5q12.3)RAD17 (5q13.2) / TRAPPC13 (5q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRAPPC13   25828
Cards
Entrez_Gene (NCBI)TRAPPC13    trafficking protein particle complex subunit 13
AliasesC5orf44; SHLD3
GeneCards (Weizmann)TRAPPC13
Ensembl hg19 (Hinxton)ENSG00000113597 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113597 [Gene_View]  ENSG00000113597 [Sequence]  chr5:65625027-65666233 [Contig_View]  TRAPPC13 [Vega]
ICGC DataPortalENSG00000113597
TCGA cBioPortalTRAPPC13
AceView (NCBI)TRAPPC13
Genatlas (Paris)TRAPPC13
SOURCE (Princeton)TRAPPC13
Genetics Home Reference (NIH)TRAPPC13
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC13  -     chr5:65625027-65666233 +  5q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC13  -     5q12.3   [Description]    (hg19-Feb_2009)
GoldenPathTRAPPC13 - 5q12.3 [CytoView hg19]  TRAPPC13 - 5q12.3 [CytoView hg38]
ImmunoBaseENSG00000113597
Genome Data Viewer NCBITRAPPC13 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK023673 AK130467 AL713699 BC012006 BC047475
RefSeq transcript (Entrez)NM_001093755 NM_001093756 NM_001243737 NM_001365342 NM_001365343 NM_024941
Consensus coding sequences : CCDS (NCBI)TRAPPC13
Gene ExpressionTRAPPC13 [ NCBI-GEO ]   TRAPPC13 [ EBI - ARRAY_EXPRESS ]   TRAPPC13 [ SEEK ]   TRAPPC13 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC13 [ Firebrowse - Broad ]
GenevisibleExpression of TRAPPC13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80006
GTEX Portal (Tissue expression)TRAPPC13
Human Protein AtlasENSG00000113597-TRAPPC13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA5PLN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA5PLN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA5PLN9
PhosPhoSitePlusA5PLN9
Domains : Interpro (EBI)TRAPPC13   
Domain families : Pfam (Sanger)DUF974 (PF06159)   
Domain families : Pfam (NCBI)pfam06159   
Conserved Domain (NCBI)TRAPPC13
SuperfamilyA5PLN9
AlphaFold pdb e-kbA5PLN9   
Human Protein Atlas [tissue]ENSG00000113597-TRAPPC13 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)A5PLN9
IntAct (EBI)A5PLN9
BioGRIDTRAPPC13
STRING (EMBL)TRAPPC13
ZODIACTRAPPC13
Ontologies - Pathways
QuickGOA5PLN9
Ontology : AmiGOprotein binding  cytosol  TRAPPIII protein complex  
Ontology : EGO-EBIprotein binding  cytosol  TRAPPIII protein complex  
NDEx NetworkTRAPPC13
Atlas of Cancer Signalling NetworkTRAPPC13
Wikipedia pathwaysTRAPPC13
Orthology - Evolution
OrthoDB80006
GeneTree (enSembl)ENSG00000113597
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC13
Homologs : HomoloGeneTRAPPC13
Homology/Alignments : Family Browser (UCSC)TRAPPC13
Gene fusions - Rearrangements
Fusion : QuiverTRAPPC13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC13
dbVarTRAPPC13
ClinVarTRAPPC13
MonarchTRAPPC13
1000_GenomesTRAPPC13 
Exome Variant ServerTRAPPC13
GNOMAD BrowserENSG00000113597
Varsome BrowserTRAPPC13
ACMGTRAPPC13 variants
VarityA5PLN9
Genomic Variants (DGV)TRAPPC13 [DGVbeta]
DECIPHERTRAPPC13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC13 
Mutations
ICGC Data PortalTRAPPC13 
TCGA Data PortalTRAPPC13 
Broad Tumor PortalTRAPPC13
OASIS PortalTRAPPC13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAPPC13
Mutations and Diseases : HGMDTRAPPC13
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRAPPC13
DgiDB (Drug Gene Interaction Database)TRAPPC13
DoCM (Curated mutations)TRAPPC13
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC13
Cancer3DTRAPPC13
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRAPPC13
MedgenTRAPPC13
Genetic Testing Registry TRAPPC13
NextProtA5PLN9 [Medical]
GENETestsTRAPPC13
Target ValidationTRAPPC13
Huge Navigator TRAPPC13 [HugePedia]
ClinGenTRAPPC13
Clinical trials, drugs, therapy
MyCancerGenomeTRAPPC13
Protein Interactions : CTDTRAPPC13
Pharm GKB GenePA162380280
PharosA5PLN9
Clinical trialTRAPPC13
Miscellaneous
canSAR (ICR)TRAPPC13
HarmonizomeTRAPPC13
DataMed IndexTRAPPC13
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRAPPC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:11 CEST 2021

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