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TRAPPC13 (trafficking protein particle complex 13)

Identity

Alias_namesC5orf44
chromosome 5 open reading frame 44
Alias_symbol (synonym)FLJ13611
FLJ26957
MGC48585
Other alias
HGNC (Hugo) TRAPPC13
LocusID (NCBI) 80006
Atlas_Id 75108
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 64920558 and ends at 64961954 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACAD11 (3q22.1) / TRAPPC13 (5q12.3)RAD17 (5q13.2) / TRAPPC13 (5q12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC13   25828
Cards
Entrez_Gene (NCBI)TRAPPC13  80006  trafficking protein particle complex 13
AliasesC5orf44
GeneCards (Weizmann)TRAPPC13
Ensembl hg19 (Hinxton)ENSG00000113597 [Gene_View]  chr5:64920558-64961954 [Contig_View]  TRAPPC13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000113597 [Gene_View]  chr5:64920558-64961954 [Contig_View]  TRAPPC13 [Vega]
ICGC DataPortalENSG00000113597
TCGA cBioPortalTRAPPC13
AceView (NCBI)TRAPPC13
Genatlas (Paris)TRAPPC13
WikiGenes80006
SOURCE (Princeton)TRAPPC13
Genetics Home Reference (NIH)TRAPPC13
Genomic and cartography
GoldenPath hg19 (UCSC)TRAPPC13  -     chr5:64920558-64961954 +  5q12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAPPC13  -     5q12.3   [Description]    (hg38-Dec_2013)
EnsemblTRAPPC13 - 5q12.3 [CytoView hg19]  TRAPPC13 - 5q12.3 [CytoView hg38]
Mapping of homologs : NCBITRAPPC13 [Mapview hg19]  TRAPPC13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023673 AK130467 AL713699 BC012006 BC047475
RefSeq transcript (Entrez)NM_001093755 NM_001093756 NM_001243737 NM_024941
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)TRAPPC13
Cluster EST : UnigeneHs.591760 [ NCBI ]
CGAP (NCI)Hs.591760
Alternative Splicing GalleryENSG00000113597
Gene ExpressionTRAPPC13 [ NCBI-GEO ]   TRAPPC13 [ EBI - ARRAY_EXPRESS ]   TRAPPC13 [ SEEK ]   TRAPPC13 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80006
GTEX Portal (Tissue expression)TRAPPC13
Protein : pattern, domain, 3D structure
UniProt/SwissProtA5PLN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA5PLN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA5PLN9
Splice isoforms : SwissVarA5PLN9
PhosPhoSitePlusA5PLN9
Domains : Interpro (EBI)DUF974   
Domain families : Pfam (Sanger)DUF974 (PF06159)   
Domain families : Pfam (NCBI)pfam06159   
Conserved Domain (NCBI)TRAPPC13
DMDM Disease mutations80006
Blocks (Seattle)TRAPPC13
SuperfamilyA5PLN9
Human Protein AtlasENSG00000113597
Peptide AtlasA5PLN9
HPRD07832
IPIIPI00884972   IPI00847958   IPI00848035   IPI00885084   IPI00872709   IPI01016050   IPI00442560   IPI00968020   IPI00982585   
Protein Interaction databases
DIP (DOE-UCLA)A5PLN9
IntAct (EBI)A5PLN9
FunCoupENSG00000113597
BioGRIDTRAPPC13
STRING (EMBL)TRAPPC13
ZODIACTRAPPC13
Ontologies - Pathways
QuickGOA5PLN9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTRAPPC13
Atlas of Cancer Signalling NetworkTRAPPC13
Wikipedia pathwaysTRAPPC13
Orthology - Evolution
OrthoDB80006
GeneTree (enSembl)ENSG00000113597
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC13
HOVERGENA5PLN9
HOGENOMA5PLN9
Homologs : HomoloGeneTRAPPC13
Homology/Alignments : Family Browser (UCSC)TRAPPC13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC13
dbVarTRAPPC13
ClinVarTRAPPC13
1000_GenomesTRAPPC13 
Exome Variant ServerTRAPPC13
ExAC (Exome Aggregation Consortium)TRAPPC13 (select the gene name)
Genetic variants : HAPMAP80006
Genomic Variants (DGV)TRAPPC13 [DGVbeta]
DECIPHER (Syndromes)5:64920558-64961954  ENSG00000113597
CONAN: Copy Number AnalysisTRAPPC13 
Mutations
ICGC Data PortalTRAPPC13 
TCGA Data PortalTRAPPC13 
Broad Tumor PortalTRAPPC13
OASIS PortalTRAPPC13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC13
BioMutasearch TRAPPC13
DgiDB (Drug Gene Interaction Database)TRAPPC13
DoCM (Curated mutations)TRAPPC13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC13 (select a term)
intoGenTRAPPC13
Cancer3DTRAPPC13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRAPPC13
Genetic Testing Registry TRAPPC13
NextProtA5PLN9 [Medical]
TSGene80006
GENETestsTRAPPC13
Huge Navigator TRAPPC13 [HugePedia]
snp3D : Map Gene to Disease80006
BioCentury BCIQTRAPPC13
ClinGenTRAPPC13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80006
Chemical/Pharm GKB GenePA162380280
Clinical trialTRAPPC13
Miscellaneous
canSAR (ICR)TRAPPC13 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC13
EVEXTRAPPC13
GoPubMedTRAPPC13
iHOPTRAPPC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:31 CET 2017

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