Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRAPPC2 (trafficking protein particle complex 2)

Identity

Alias_namesSEDL
spondyloepiphyseal dysplasia, late
Alias_symbol (synonym)TRS20
SEDT
MIP-2A
ZNF547L
hYP38334
Other aliasMIP2A
TRAPPC2P1
HGNC (Hugo) TRAPPC2
LocusID (NCBI) 6399
Atlas_Id 75109
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 13712242 and ends at 13734635 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRAPPC2 (Xp22.2) / RIC1 (9p24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC2   23068
Cards
Entrez_Gene (NCBI)TRAPPC2  6399  trafficking protein particle complex 2
AliasesMIP2A; SEDL; SEDT; TRAPPC2P1; 
TRS20; ZNF547L; hYP38334
GeneCards (Weizmann)TRAPPC2
Ensembl hg19 (Hinxton)ENSG00000196459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196459 [Gene_View]  chrX:13712242-13734635 [Contig_View]  TRAPPC2 [Vega]
ICGC DataPortalENSG00000196459
TCGA cBioPortalTRAPPC2
AceView (NCBI)TRAPPC2
Genatlas (Paris)TRAPPC2
WikiGenes6399
SOURCE (Princeton)TRAPPC2
Genetics Home Reference (NIH)TRAPPC2
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC2  -     chrX:13712242-13734635 -  Xp22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC2  -     Xp22.2   [Description]    (hg19-Feb_2009)
EnsemblTRAPPC2 - Xp22.2 [CytoView hg19]  TRAPPC2 - Xp22.2 [CytoView hg38]
Mapping of homologs : NCBITRAPPC2 [Mapview hg19]  TRAPPC2 [Mapview hg38]
OMIM300202   313400   
Gene and transcription
Genbank (Entrez)AA351319 AA770629 AK055671 AK098253 AK310542
RefSeq transcript (Entrez)NM_001011658 NM_001128835 NM_014563
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAPPC2
Cluster EST : UnigeneHs.622292 [ NCBI ]
CGAP (NCI)Hs.622292
Alternative Splicing GalleryENSG00000196459
Gene ExpressionTRAPPC2 [ NCBI-GEO ]   TRAPPC2 [ EBI - ARRAY_EXPRESS ]   TRAPPC2 [ SEEK ]   TRAPPC2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6399
GTEX Portal (Tissue expression)TRAPPC2
Human Protein AtlasENSG00000196459-TRAPPC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DI81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DI81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DI81
Splice isoforms : SwissVarP0DI81
PhosPhoSitePlusP0DI81
Domains : Interpro (EBI)Longin-like_dom    Sedlin   
Domain families : Pfam (Sanger)Sedlin_N (PF04628)   
Domain families : Pfam (NCBI)pfam04628   
Conserved Domain (NCBI)TRAPPC2
DMDM Disease mutations6399
Blocks (Seattle)TRAPPC2
SuperfamilyP0DI81
Human Protein Atlas [tissue]ENSG00000196459-TRAPPC2 [tissue]
Peptide AtlasP0DI81
HPRD02189
Protein Interaction databases
DIP (DOE-UCLA)P0DI81
IntAct (EBI)P0DI81
FunCoupENSG00000196459
BioGRIDTRAPPC2
STRING (EMBL)TRAPPC2
ZODIACTRAPPC2
Ontologies - Pathways
QuickGOP0DI81
Ontology : AmiGOGolgi membrane  skeletal system development  protein binding  nucleus  nucleoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  ER to Golgi vesicle-mediated transport  transcription factor binding  Rab guanyl-nucleotide exchange factor activity  intracellular membrane-bounded organelle  positive regulation of GTPase activity  ion channel binding  COPII vesicle coating  perinuclear region of cytoplasm  membrane organization  
Ontology : EGO-EBIGolgi membrane  skeletal system development  protein binding  nucleus  nucleoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  cytosol  transcription, DNA-templated  regulation of transcription, DNA-templated  ER to Golgi vesicle-mediated transport  transcription factor binding  Rab guanyl-nucleotide exchange factor activity  intracellular membrane-bounded organelle  positive regulation of GTPase activity  ion channel binding  COPII vesicle coating  perinuclear region of cytoplasm  membrane organization  
NDEx NetworkTRAPPC2
Atlas of Cancer Signalling NetworkTRAPPC2
Wikipedia pathwaysTRAPPC2
Orthology - Evolution
OrthoDB6399
GeneTree (enSembl)ENSG00000196459
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC2
HOVERGENP0DI81
HOGENOMP0DI81
Homologs : HomoloGeneTRAPPC2
Homology/Alignments : Family Browser (UCSC)TRAPPC2
Gene fusions - Rearrangements
Tumor Fusion PortalTRAPPC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC2
dbVarTRAPPC2
ClinVarTRAPPC2
1000_GenomesTRAPPC2 
Exome Variant ServerTRAPPC2
ExAC (Exome Aggregation Consortium)ENSG00000196459
GNOMAD BrowserENSG00000196459
Genetic variants : HAPMAP6399
Genomic Variants (DGV)TRAPPC2 [DGVbeta]
DECIPHERTRAPPC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC2 
Mutations
ICGC Data PortalTRAPPC2 
TCGA Data PortalTRAPPC2 
Broad Tumor PortalTRAPPC2
OASIS PortalTRAPPC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC2
DgiDB (Drug Gene Interaction Database)TRAPPC2
DoCM (Curated mutations)TRAPPC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC2 (select a term)
intoGenTRAPPC2
Cancer3DTRAPPC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300202    313400   
Orphanet12224   
DisGeNETTRAPPC2
MedgenTRAPPC2
Genetic Testing Registry TRAPPC2
NextProtP0DI81 [Medical]
TSGene6399
GENETestsTRAPPC2
Target ValidationTRAPPC2
Huge Navigator TRAPPC2 [HugePedia]
snp3D : Map Gene to Disease6399
BioCentury BCIQTRAPPC2
ClinGenTRAPPC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6399
Chemical/Pharm GKB GenePA35631
Clinical trialTRAPPC2
Miscellaneous
canSAR (ICR)TRAPPC2 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC2
EVEXTRAPPC2
GoPubMedTRAPPC2
iHOPTRAPPC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:00:49 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.