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TRAPPC2 (trafficking protein particle complex subunit 2)

Identity

Alias (NCBI)MIP2A
SEDL
SEDT
TRAPPC2P1
TRS20
ZNF547L
hYP38334
HGNC (Hugo) TRAPPC2
HGNC Alias symbTRS20
SEDT
MIP-2A
ZNF547L
hYP38334
HGNC Previous nameSEDL
HGNC Previous namespondyloepiphyseal dysplasia, late
LocusID (NCBI) 6399
Atlas_Id 75109
Location Xp22.2  [Link to chromosome band Xp22]
Location_base_pair Starts at 13712242 and ends at 13734635 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRAPPC2 (Xp22.2) / RIC1 (9p24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRAPPC2   23068
Cards
Entrez_Gene (NCBI)TRAPPC2    trafficking protein particle complex subunit 2
AliasesMIP2A; SEDL; SEDT; TRAPPC2P1; 
TRS20; ZNF547L; hYP38334
GeneCards (Weizmann)TRAPPC2
Ensembl hg19 (Hinxton)ENSG00000196459 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196459 [Gene_View]  ENSG00000196459 [Sequence]  chrX:13712242-13734635 [Contig_View]  TRAPPC2 [Vega]
ICGC DataPortalENSG00000196459
TCGA cBioPortalTRAPPC2
AceView (NCBI)TRAPPC2
Genatlas (Paris)TRAPPC2
SOURCE (Princeton)TRAPPC2
Genetics Home Reference (NIH)TRAPPC2
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC2  -     chrX:13712242-13734635 -  Xp22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC2  -     Xp22.2   [Description]    (hg19-Feb_2009)
GoldenPathTRAPPC2 - Xp22.2 [CytoView hg19]  TRAPPC2 - Xp22.2 [CytoView hg38]
ImmunoBaseENSG00000196459
Genome Data Viewer NCBITRAPPC2 [Mapview hg19]  
OMIM300202   313400   
Gene and transcription
Genbank (Entrez)AA351319 AA770629 AK055671 AK098253 AK310542
RefSeq transcript (Entrez)NM_001011658 NM_001128835 NM_014563
Consensus coding sequences : CCDS (NCBI)TRAPPC2
Gene ExpressionTRAPPC2 [ NCBI-GEO ]   TRAPPC2 [ EBI - ARRAY_EXPRESS ]   TRAPPC2 [ SEEK ]   TRAPPC2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC2 [ Firebrowse - Broad ]
GenevisibleExpression of TRAPPC2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6399
GTEX Portal (Tissue expression)TRAPPC2
Human Protein AtlasENSG00000196459-TRAPPC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DI81   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DI81  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DI81
PhosPhoSitePlusP0DI81
Domains : Interpro (EBI)Longin-like_dom_sf    Sedlin   
Domain families : Pfam (Sanger)Sedlin_N (PF04628)   
Domain families : Pfam (NCBI)pfam04628   
Conserved Domain (NCBI)TRAPPC2
SuperfamilyP0DI81
AlphaFold pdb e-kbP0DI81   
Human Protein Atlas [tissue]ENSG00000196459-TRAPPC2 [tissue]
HPRD02189
Protein Interaction databases
DIP (DOE-UCLA)P0DI81
IntAct (EBI)P0DI81
BioGRIDTRAPPC2
STRING (EMBL)TRAPPC2
ZODIACTRAPPC2
Ontologies - Pathways
QuickGOP0DI81
Ontology : AmiGOskeletal system development  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  cytosol  regulation of transcription, DNA-templated  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  transcription factor binding  TRAPP complex  TRAPP complex  intracellular membrane-bounded organelle  ion channel binding  COPII vesicle coating  perinuclear region of cytoplasm  
Ontology : EGO-EBIskeletal system development  protein binding  nucleus  nucleus  nucleoplasm  cytoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  cytosol  regulation of transcription, DNA-templated  endoplasmic reticulum to Golgi vesicle-mediated transport  endoplasmic reticulum to Golgi vesicle-mediated transport  transcription factor binding  TRAPP complex  TRAPP complex  intracellular membrane-bounded organelle  ion channel binding  COPII vesicle coating  perinuclear region of cytoplasm  
NDEx NetworkTRAPPC2
Atlas of Cancer Signalling NetworkTRAPPC2
Wikipedia pathwaysTRAPPC2
Orthology - Evolution
OrthoDB6399
GeneTree (enSembl)ENSG00000196459
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC2
Homologs : HomoloGeneTRAPPC2
Homology/Alignments : Family Browser (UCSC)TRAPPC2
Gene fusions - Rearrangements
Fusion : QuiverTRAPPC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC2
dbVarTRAPPC2
ClinVarTRAPPC2
MonarchTRAPPC2
1000_GenomesTRAPPC2 
Exome Variant ServerTRAPPC2
GNOMAD BrowserENSG00000196459
Varsome BrowserTRAPPC2
ACMGTRAPPC2 variants
VarityP0DI81
Genomic Variants (DGV)TRAPPC2 [DGVbeta]
DECIPHERTRAPPC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC2 
Mutations
ICGC Data PortalTRAPPC2 
TCGA Data PortalTRAPPC2 
Broad Tumor PortalTRAPPC2
OASIS PortalTRAPPC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAPPC2
Mutations and Diseases : HGMDTRAPPC2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRAPPC2
DgiDB (Drug Gene Interaction Database)TRAPPC2
DoCM (Curated mutations)TRAPPC2
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC2
Cancer3DTRAPPC2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300202    313400   
Orphanet12224   
DisGeNETTRAPPC2
MedgenTRAPPC2
Genetic Testing Registry TRAPPC2
NextProtP0DI81 [Medical]
GENETestsTRAPPC2
Target ValidationTRAPPC2
Huge Navigator TRAPPC2 [HugePedia]
ClinGenTRAPPC2
Clinical trials, drugs, therapy
MyCancerGenomeTRAPPC2
Protein Interactions : CTDTRAPPC2
Pharm GKB GenePA35631
PharosP0DI81
Clinical trialTRAPPC2
Miscellaneous
canSAR (ICR)TRAPPC2
HarmonizomeTRAPPC2
DataMed IndexTRAPPC2
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRAPPC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:43 CEST 2021

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