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TRAPPC2B (trafficking protein particle complex 2B)

Identity

Alias_namesSEDLP
TRAPPC2P1
spondyloepiphyseal dysplasia, late, pseudogene
trafficking protein particle complex 2 pseudogene 1
Alias_symbol (synonym)SEDLP1
MIP-2A
Other alias
HGNC (Hugo) TRAPPC2B
LocusID (NCBI) 10597
Atlas_Id 75110
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57363511 and ends at 57365353 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC2B   10710
Cards
Entrez_Gene (NCBI)TRAPPC2B  10597  trafficking protein particle complex 2B
AliasesMIP-2A; SEDLP; SEDLP1; TRAPPC2P1
GeneCards (Weizmann)TRAPPC2B
Ensembl hg19 (Hinxton)ENSG00000256060 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256060 [Gene_View]  chr19:57363511-57365353 [Contig_View]  TRAPPC2B [Vega]
ICGC DataPortalENSG00000256060
TCGA cBioPortalTRAPPC2B
AceView (NCBI)TRAPPC2B
Genatlas (Paris)TRAPPC2B
WikiGenes10597
SOURCE (Princeton)TRAPPC2B
Genetics Home Reference (NIH)TRAPPC2B
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC2B  -     chr19:57363511-57365353 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC2B  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblTRAPPC2B - 19q13.43 [CytoView hg19]  TRAPPC2B - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBITRAPPC2B [Mapview hg19]  TRAPPC2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF058918 AF291676 BC008889 BC032809 BC064426
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAPPC2B
Cluster EST : UnigeneHs.446620 [ NCBI ]
CGAP (NCI)Hs.446620
Alternative Splicing GalleryENSG00000256060
Gene ExpressionTRAPPC2B [ NCBI-GEO ]   TRAPPC2B [ EBI - ARRAY_EXPRESS ]   TRAPPC2B [ SEEK ]   TRAPPC2B [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10597
GTEX Portal (Tissue expression)TRAPPC2B
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DI82   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DI82  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DI82
Splice isoforms : SwissVarP0DI82
PhosPhoSitePlusP0DI82
Domains : Interpro (EBI)Longin-like_dom    Sedlin   
Domain families : Pfam (Sanger)Sedlin_N (PF04628)   
Domain families : Pfam (NCBI)pfam04628   
Conserved Domain (NCBI)TRAPPC2B
DMDM Disease mutations10597
Blocks (Seattle)TRAPPC2B
SuperfamilyP0DI82
Human Protein AtlasENSG00000256060
Peptide AtlasP0DI82
IPIIPI00005119   IPI01025157   IPI00940542   IPI00641353   IPI00979652   
Protein Interaction databases
DIP (DOE-UCLA)P0DI82
IntAct (EBI)P0DI82
FunCoupENSG00000256060
BioGRIDTRAPPC2B
STRING (EMBL)TRAPPC2B
ZODIACTRAPPC2B
Ontologies - Pathways
QuickGOP0DI82
Ontology : AmiGOnucleus  nucleoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  transcription, DNA-templated  ER to Golgi vesicle-mediated transport  intracellular membrane-bounded organelle  perinuclear region of cytoplasm  
Ontology : EGO-EBInucleus  nucleoplasm  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  transcription, DNA-templated  ER to Golgi vesicle-mediated transport  intracellular membrane-bounded organelle  perinuclear region of cytoplasm  
NDEx NetworkTRAPPC2B
Atlas of Cancer Signalling NetworkTRAPPC2B
Wikipedia pathwaysTRAPPC2B
Orthology - Evolution
OrthoDB10597
GeneTree (enSembl)ENSG00000256060
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC2B
HOVERGENP0DI82
HOGENOMP0DI82
Homologs : HomoloGeneTRAPPC2B
Homology/Alignments : Family Browser (UCSC)TRAPPC2B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC2B
dbVarTRAPPC2B
ClinVarTRAPPC2B
1000_GenomesTRAPPC2B 
Exome Variant ServerTRAPPC2B
ExAC (Exome Aggregation Consortium)TRAPPC2B (select the gene name)
Genetic variants : HAPMAP10597
Genomic Variants (DGV)TRAPPC2B [DGVbeta]
DECIPHERTRAPPC2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC2B 
Mutations
ICGC Data PortalTRAPPC2B 
TCGA Data PortalTRAPPC2B 
Broad Tumor PortalTRAPPC2B
OASIS PortalTRAPPC2B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRAPPC2B
BioMutasearch TRAPPC2B
DgiDB (Drug Gene Interaction Database)TRAPPC2B
DoCM (Curated mutations)TRAPPC2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC2B (select a term)
intoGenTRAPPC2B
Cancer3DTRAPPC2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRAPPC2B
Genetic Testing Registry TRAPPC2B
NextProtP0DI82 [Medical]
TSGene10597
GENETestsTRAPPC2B
Target ValidationTRAPPC2B
Huge Navigator TRAPPC2B [HugePedia]
snp3D : Map Gene to Disease10597
BioCentury BCIQTRAPPC2B
ClinGenTRAPPC2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10597
Chemical/Pharm GKB GenePA35632
Clinical trialTRAPPC2B
Miscellaneous
canSAR (ICR)TRAPPC2B (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC2B
EVEXTRAPPC2B
GoPubMedTRAPPC2B
iHOPTRAPPC2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:46:55 CEST 2017

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