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TRAPPC2L (trafficking protein particle complex 2-like)

Identity

Alias_namestrafficking protein particle complex 2-like
Alias_symbol (synonym)HSPC176
Other alias
HGNC (Hugo) TRAPPC2L
LocusID (NCBI) 51693
Atlas_Id 75111
Location 16q24.3  [Link to chromosome band 16q24]
Location_base_pair Starts at 88923506 and ends at 88927520 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC2L   30887
Cards
Entrez_Gene (NCBI)TRAPPC2L  51693  trafficking protein particle complex 2-like
AliasesHSPC176
GeneCards (Weizmann)TRAPPC2L
Ensembl hg19 (Hinxton)ENSG00000167515 [Gene_View]  chr16:88923506-88927520 [Contig_View]  TRAPPC2L [Vega]
Ensembl hg38 (Hinxton)ENSG00000167515 [Gene_View]  chr16:88923506-88927520 [Contig_View]  TRAPPC2L [Vega]
ICGC DataPortalENSG00000167515
TCGA cBioPortalTRAPPC2L
AceView (NCBI)TRAPPC2L
Genatlas (Paris)TRAPPC2L
WikiGenes51693
SOURCE (Princeton)TRAPPC2L
Genetics Home Reference (NIH)TRAPPC2L
Genomic and cartography
GoldenPath hg19 (UCSC)TRAPPC2L  -     chr16:88923506-88927520 +  16q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAPPC2L  -     16q24.3   [Description]    (hg38-Dec_2013)
EnsemblTRAPPC2L - 16q24.3 [CytoView hg19]  TRAPPC2L - 16q24.3 [CytoView hg38]
Mapping of homologs : NCBITRAPPC2L [Mapview hg19]  TRAPPC2L [Mapview hg38]
OMIM610970   
Gene and transcription
Genbank (Entrez)AF089106 AF161524 AK126779 AK307253 AK310805
RefSeq transcript (Entrez)NM_016209
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_008667 NT_010498 NW_004929403
Consensus coding sequences : CCDS (NCBI)TRAPPC2L
Cluster EST : UnigeneHs.461722 [ NCBI ]
CGAP (NCI)Hs.461722
Alternative Splicing GalleryENSG00000167515
Gene ExpressionTRAPPC2L [ NCBI-GEO ]   TRAPPC2L [ EBI - ARRAY_EXPRESS ]   TRAPPC2L [ SEEK ]   TRAPPC2L [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC2L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51693
GTEX Portal (Tissue expression)TRAPPC2L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UL33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UL33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UL33
Splice isoforms : SwissVarQ9UL33
PhosPhoSitePlusQ9UL33
Domains : Interpro (EBI)Longin-like_dom    Sedlin   
Domain families : Pfam (Sanger)Sedlin_N (PF04628)   
Domain families : Pfam (NCBI)pfam04628   
Conserved Domain (NCBI)TRAPPC2L
DMDM Disease mutations51693
Blocks (Seattle)TRAPPC2L
SuperfamilyQ9UL33
Human Protein AtlasENSG00000167515
Peptide AtlasQ9UL33
HPRD13711
IPIIPI00007819   IPI00644084   
Protein Interaction databases
DIP (DOE-UCLA)Q9UL33
IntAct (EBI)Q9UL33
FunCoupENSG00000167515
BioGRIDTRAPPC2L
STRING (EMBL)TRAPPC2L
ZODIACTRAPPC2L
Ontologies - Pathways
QuickGOQ9UL33
Ontology : AmiGOprotein binding  cytoplasm  endoplasmic reticulum  Golgi apparatus  ER to Golgi vesicle-mediated transport  perinuclear region of cytoplasm  
Ontology : EGO-EBIprotein binding  cytoplasm  endoplasmic reticulum  Golgi apparatus  ER to Golgi vesicle-mediated transport  perinuclear region of cytoplasm  
NDEx NetworkTRAPPC2L
Atlas of Cancer Signalling NetworkTRAPPC2L
Wikipedia pathwaysTRAPPC2L
Orthology - Evolution
OrthoDB51693
GeneTree (enSembl)ENSG00000167515
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC2L
HOVERGENQ9UL33
HOGENOMQ9UL33
Homologs : HomoloGeneTRAPPC2L
Homology/Alignments : Family Browser (UCSC)TRAPPC2L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC2L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC2L
dbVarTRAPPC2L
ClinVarTRAPPC2L
1000_GenomesTRAPPC2L 
Exome Variant ServerTRAPPC2L
ExAC (Exome Aggregation Consortium)TRAPPC2L (select the gene name)
Genetic variants : HAPMAP51693
Genomic Variants (DGV)TRAPPC2L [DGVbeta]
DECIPHER (Syndromes)16:88923506-88927520  ENSG00000167515
CONAN: Copy Number AnalysisTRAPPC2L 
Mutations
ICGC Data PortalTRAPPC2L 
TCGA Data PortalTRAPPC2L 
Broad Tumor PortalTRAPPC2L
OASIS PortalTRAPPC2L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC2L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC2L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC2L
DgiDB (Drug Gene Interaction Database)TRAPPC2L
DoCM (Curated mutations)TRAPPC2L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC2L (select a term)
intoGenTRAPPC2L
Cancer3DTRAPPC2L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610970   
Orphanet
MedgenTRAPPC2L
Genetic Testing Registry TRAPPC2L
NextProtQ9UL33 [Medical]
TSGene51693
GENETestsTRAPPC2L
Huge Navigator TRAPPC2L [HugePedia]
snp3D : Map Gene to Disease51693
BioCentury BCIQTRAPPC2L
ClinGenTRAPPC2L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51693
Chemical/Pharm GKB GenePA145147879
Clinical trialTRAPPC2L
Miscellaneous
canSAR (ICR)TRAPPC2L (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC2L
EVEXTRAPPC2L
GoPubMedTRAPPC2L
iHOPTRAPPC2L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:31 CET 2017

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