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TRAPPC3L (trafficking protein particle complex 3 like)

Identity

Alias_namesBET3L
BET3 like (S. cerevisiae)
trafficking protein particle complex 3-like
Alias_symbol (synonym)bA259P20.2
FLJ11180
Other alias
HGNC (Hugo) TRAPPC3L
LocusID (NCBI) 100128327
Atlas_Id 75113
Location 6q22.1  [Link to chromosome band 6q22]
Location_base_pair Starts at 116496488 and ends at 116545610 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC3L   21090
Cards
Entrez_Gene (NCBI)TRAPPC3L  100128327  trafficking protein particle complex 3 like
AliasesBET3L; bA259P20.2
GeneCards (Weizmann)TRAPPC3L
Ensembl hg19 (Hinxton)ENSG00000173626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173626 [Gene_View]  ENSG00000173626 [Sequence]  chr6:116496488-116545610 [Contig_View]  TRAPPC3L [Vega]
ICGC DataPortalENSG00000173626
TCGA cBioPortalTRAPPC3L
AceView (NCBI)TRAPPC3L
Genatlas (Paris)TRAPPC3L
WikiGenes100128327
SOURCE (Princeton)TRAPPC3L
Genetics Home Reference (NIH)TRAPPC3L
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC3L  -     chr6:116496488-116545610 -  6q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC3L  -     6q22.1   [Description]    (hg19-Feb_2009)
EnsemblTRAPPC3L - 6q22.1 [CytoView hg19]  TRAPPC3L - 6q22.1 [CytoView hg38]
Mapping of homologs : NCBITRAPPC3L [Mapview hg19]  TRAPPC3L [Mapview hg38]
OMIM614137   
Gene and transcription
Genbank (Entrez)AI090359 AI745276 AK002042 BC127757 BC127758
RefSeq transcript (Entrez)NM_001139444
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAPPC3L
Cluster EST : UnigeneHs.134795 [ NCBI ]
CGAP (NCI)Hs.134795
Alternative Splicing GalleryENSG00000173626
Gene ExpressionTRAPPC3L [ NCBI-GEO ]   TRAPPC3L [ EBI - ARRAY_EXPRESS ]   TRAPPC3L [ SEEK ]   TRAPPC3L [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC3L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100128327
GTEX Portal (Tissue expression)TRAPPC3L
Human Protein AtlasENSG00000173626-TRAPPC3L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T215   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T215  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T215
Splice isoforms : SwissVarQ5T215
PhosPhoSitePlusQ5T215
Domains : Interpro (EBI)Bet3    NO_sig/Golgi_transp_ligand-bd    TRAPP_component   
Domain families : Pfam (Sanger)TRAPP (PF04051)   
Domain families : Pfam (NCBI)pfam04051   
Conserved Domain (NCBI)TRAPPC3L
DMDM Disease mutations100128327
Blocks (Seattle)TRAPPC3L
SuperfamilyQ5T215
Human Protein Atlas [tissue]ENSG00000173626-TRAPPC3L [tissue]
Peptide AtlasQ5T215
IPIIPI00642951   IPI00643474   IPI00164955   
Protein Interaction databases
DIP (DOE-UCLA)Q5T215
IntAct (EBI)Q5T215
FunCoupENSG00000173626
BioGRIDTRAPPC3L
STRING (EMBL)TRAPPC3L
ZODIACTRAPPC3L
Ontologies - Pathways
QuickGOQ5T215
Ontology : AmiGOendoplasmic reticulum  Golgi apparatus  TRAPP complex  Golgi vesicle transport  
Ontology : EGO-EBIendoplasmic reticulum  Golgi apparatus  TRAPP complex  Golgi vesicle transport  
NDEx NetworkTRAPPC3L
Atlas of Cancer Signalling NetworkTRAPPC3L
Wikipedia pathwaysTRAPPC3L
Orthology - Evolution
OrthoDB100128327
GeneTree (enSembl)ENSG00000173626
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC3L
HOVERGENQ5T215
HOGENOMQ5T215
Homologs : HomoloGeneTRAPPC3L
Homology/Alignments : Family Browser (UCSC)TRAPPC3L
Gene fusions - Rearrangements
Fusion : QuiverTRAPPC3L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC3L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC3L
dbVarTRAPPC3L
ClinVarTRAPPC3L
1000_GenomesTRAPPC3L 
Exome Variant ServerTRAPPC3L
ExAC (Exome Aggregation Consortium)ENSG00000173626
GNOMAD BrowserENSG00000173626
Varsome BrowserTRAPPC3L
Genetic variants : HAPMAP100128327
Genomic Variants (DGV)TRAPPC3L [DGVbeta]
DECIPHERTRAPPC3L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC3L 
Mutations
ICGC Data PortalTRAPPC3L 
TCGA Data PortalTRAPPC3L 
Broad Tumor PortalTRAPPC3L
OASIS PortalTRAPPC3L [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRAPPC3L
BioMutasearch TRAPPC3L
DgiDB (Drug Gene Interaction Database)TRAPPC3L
DoCM (Curated mutations)TRAPPC3L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC3L (select a term)
intoGenTRAPPC3L
Cancer3DTRAPPC3L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614137   
Orphanet
DisGeNETTRAPPC3L
MedgenTRAPPC3L
Genetic Testing Registry TRAPPC3L
NextProtQ5T215 [Medical]
TSGene100128327
GENETestsTRAPPC3L
Target ValidationTRAPPC3L
Huge Navigator TRAPPC3L [HugePedia]
snp3D : Map Gene to Disease100128327
BioCentury BCIQTRAPPC3L
ClinGenTRAPPC3L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100128327
Chemical/Pharm GKB GenePA134866254
Clinical trialTRAPPC3L
Miscellaneous
canSAR (ICR)TRAPPC3L (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC3L
EVEXTRAPPC3L
GoPubMedTRAPPC3L
iHOPTRAPPC3L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:36:24 CEST 2018

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