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TRAPPC4 (trafficking protein particle complex 4)

Identity

Alias (NCBI)CGI-104
HSPC172
NEDESBA
PTD009
SBDN
SYNBINDIN
TRS23
HGNC (Hugo) TRAPPC4
HGNC Alias symbTRS23
SBDN
PTD009
LocusID (NCBI) 51399
Atlas_Id 53909
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 119018766 and ends at 119024134 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COX15 (10q24.2) / TRAPPC4 (11q23.3)HSF5 (17q22) / TRAPPC4 (11q23.3)TRAPPC4 (11q23.3) / FBXL2 (3p22.3)
UTP11 (1p34.3) / TRAPPC4 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TRAPPC4   19943
Cards
Entrez_Gene (NCBI)TRAPPC4    trafficking protein particle complex 4
AliasesCGI-104; HSPC172; NEDESBA; PTD009; 
SBDN; SYNBINDIN; TRS23
GeneCards (Weizmann)TRAPPC4
Ensembl hg19 (Hinxton)ENSG00000196655 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196655 [Gene_View]  ENSG00000196655 [Sequence]  chr11:119018766-119024134 [Contig_View]  TRAPPC4 [Vega]
ICGC DataPortalENSG00000196655
TCGA cBioPortalTRAPPC4
AceView (NCBI)TRAPPC4
Genatlas (Paris)TRAPPC4
SOURCE (Princeton)TRAPPC4
Genetics Home Reference (NIH)TRAPPC4
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC4  -     chr11:119018766-119024134 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC4  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathTRAPPC4 - 11q23.3 [CytoView hg19]  TRAPPC4 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000196655
genome Data Viewer NCBITRAPPC4 [Mapview hg19]  
OMIM610971   618741   
Gene and transcription
Genbank (Entrez)AF078862 AF105025 AF151862 AF161520 AK025623
RefSeq transcript (Entrez)NM_001318486 NM_001318488 NM_001318489 NM_001318490 NM_001318492 NM_001318494 NM_016146
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAPPC4
Alternative Splicing GalleryENSG00000196655
Gene ExpressionTRAPPC4 [ NCBI-GEO ]   TRAPPC4 [ EBI - ARRAY_EXPRESS ]   TRAPPC4 [ SEEK ]   TRAPPC4 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC4 [ Firebrowse - Broad ]
GenevisibleExpression of TRAPPC4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51399
GTEX Portal (Tissue expression)TRAPPC4
Human Protein AtlasENSG00000196655-TRAPPC4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y296   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y296  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y296
Splice isoforms : SwissVarQ9Y296
PhosPhoSitePlusQ9Y296
Domains : Interpro (EBI)Longin-like_dom_sf    TRAPPC   
Domain families : Pfam (Sanger)Sybindin (PF04099)   
Domain families : Pfam (NCBI)pfam04099   
Domain families : Smart (EMBL)Sybindin (SM01399)  
Conserved Domain (NCBI)TRAPPC4
Blocks (Seattle)TRAPPC4
PDB (RSDB)2J3T    2JSN    2ZMV   
PDB Europe2J3T    2JSN    2ZMV   
PDB (PDBSum)2J3T    2JSN    2ZMV   
PDB (IMB)2J3T    2JSN    2ZMV   
Structural Biology KnowledgeBase2J3T    2JSN    2ZMV   
SCOP (Structural Classification of Proteins)2J3T    2JSN    2ZMV   
CATH (Classification of proteins structures)2J3T    2JSN    2ZMV   
SuperfamilyQ9Y296
Human Protein Atlas [tissue]ENSG00000196655-TRAPPC4 [tissue]
Peptide AtlasQ9Y296
HPRD18220
IPIIPI00007691   IPI00910760   IPI00982028   IPI00978646   IPI00910488   IPI00976579   IPI00980491   IPI01008937   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y296
IntAct (EBI)Q9Y296
BioGRIDTRAPPC4
STRING (EMBL)TRAPPC4
ZODIACTRAPPC4
Ontologies - Pathways
QuickGOQ9Y296
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum  Golgi stack  cytosol  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  autophagy  synaptic vesicle  dendrite development  Rab guanyl-nucleotide exchange factor activity  TRAPP complex  TRAPP complex  TRAPP complex  dendrite  synapse  COPII vesicle coating  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum  Golgi stack  cytosol  ER to Golgi vesicle-mediated transport  ER to Golgi vesicle-mediated transport  autophagy  synaptic vesicle  dendrite development  Rab guanyl-nucleotide exchange factor activity  TRAPP complex  TRAPP complex  TRAPP complex  dendrite  synapse  COPII vesicle coating  
NDEx NetworkTRAPPC4
Atlas of Cancer Signalling NetworkTRAPPC4
Wikipedia pathwaysTRAPPC4
Orthology - Evolution
OrthoDB51399
GeneTree (enSembl)ENSG00000196655
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC4
HOGENOMQ9Y296
Homologs : HomoloGeneTRAPPC4
Homology/Alignments : Family Browser (UCSC)TRAPPC4
Gene fusions - Rearrangements
Fusion : QuiverTRAPPC4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC4 [hg38]
dbVarTRAPPC4
ClinVarTRAPPC4
MonarchTRAPPC4
1000_GenomesTRAPPC4 
Exome Variant ServerTRAPPC4
GNOMAD BrowserENSG00000196655
Varsome BrowserTRAPPC4
Genomic Variants (DGV)TRAPPC4 [DGVbeta]
DECIPHERTRAPPC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC4 
Mutations
ICGC Data PortalTRAPPC4 
TCGA Data PortalTRAPPC4 
Broad Tumor PortalTRAPPC4
OASIS PortalTRAPPC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAPPC4
Mutations and Diseases : HGMDTRAPPC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC4
DgiDB (Drug Gene Interaction Database)TRAPPC4
DoCM (Curated mutations)TRAPPC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC4 (select a term)
intoGenTRAPPC4
Cancer3DTRAPPC4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610971    618741   
Orphanet
DisGeNETTRAPPC4
MedgenTRAPPC4
Genetic Testing Registry TRAPPC4
NextProtQ9Y296 [Medical]
GENETestsTRAPPC4
Target ValidationTRAPPC4
Huge Navigator TRAPPC4 [HugePedia]
ClinGenTRAPPC4
Clinical trials, drugs, therapy
MyCancerGenomeTRAPPC4
Protein Interactions : CTD
Pharm GKB GenePA134906910
PharosQ9Y296
Clinical trialTRAPPC4
Miscellaneous
canSAR (ICR)TRAPPC4 (select the gene name)
HarmonizomeTRAPPC4
DataMed IndexTRAPPC4
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRAPPC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Fri Jan 1 18:42:15 CET 2021

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