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TRAPPC4 (trafficking protein particle complex 4)

Identity

Alias_symbol (synonym)TRS23
SBDN
PTD009
Other aliasCGI-104
HSPC172
SYNBINDIN
HGNC (Hugo) TRAPPC4
LocusID (NCBI) 51399
Atlas_Id 53909
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 119018469 and ends at 119023674 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COX15 (10q24.2) / TRAPPC4 (11q23.3)HSF5 (17q22) / TRAPPC4 (11q23.3)TRAPPC4 (11q23.3) / FBXL2 (3p22.3)
UTP11 (1p34.3) / TRAPPC4 (11q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC4   19943
Cards
Entrez_Gene (NCBI)TRAPPC4  51399  trafficking protein particle complex 4
AliasesCGI-104; HSPC172; PTD009; SBDN; 
SYNBINDIN; TRS23
GeneCards (Weizmann)TRAPPC4
Ensembl hg19 (Hinxton)ENSG00000196655 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196655 [Gene_View]  chr11:119018469-119023674 [Contig_View]  TRAPPC4 [Vega]
ICGC DataPortalENSG00000196655
TCGA cBioPortalTRAPPC4
AceView (NCBI)TRAPPC4
Genatlas (Paris)TRAPPC4
WikiGenes51399
SOURCE (Princeton)TRAPPC4
Genetics Home Reference (NIH)TRAPPC4
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC4  -     chr11:119018469-119023674 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC4  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblTRAPPC4 - 11q23.3 [CytoView hg19]  TRAPPC4 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBITRAPPC4 [Mapview hg19]  TRAPPC4 [Mapview hg38]
OMIM610971   
Gene and transcription
Genbank (Entrez)AF078862 AF105025 AF151862 AF161520 AK025623
RefSeq transcript (Entrez)NM_001318486 NM_001318488 NM_001318489 NM_001318490 NM_001318492 NM_001318494 NM_016146
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAPPC4
Cluster EST : UnigeneHs.132760 [ NCBI ]
CGAP (NCI)Hs.132760
Alternative Splicing GalleryENSG00000196655
Gene ExpressionTRAPPC4 [ NCBI-GEO ]   TRAPPC4 [ EBI - ARRAY_EXPRESS ]   TRAPPC4 [ SEEK ]   TRAPPC4 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51399
GTEX Portal (Tissue expression)TRAPPC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y296   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y296  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y296
Splice isoforms : SwissVarQ9Y296
PhosPhoSitePlusQ9Y296
Domains : Interpro (EBI)Longin-like_dom    TRAPPC   
Domain families : Pfam (Sanger)Sybindin (PF04099)   
Domain families : Pfam (NCBI)pfam04099   
Domain families : Smart (EMBL)Sybindin (SM01399)  
Conserved Domain (NCBI)TRAPPC4
DMDM Disease mutations51399
Blocks (Seattle)TRAPPC4
PDB (SRS)2J3T    2JSN    2ZMV   
PDB (PDBSum)2J3T    2JSN    2ZMV   
PDB (IMB)2J3T    2JSN    2ZMV   
PDB (RSDB)2J3T    2JSN    2ZMV   
Structural Biology KnowledgeBase2J3T    2JSN    2ZMV   
SCOP (Structural Classification of Proteins)2J3T    2JSN    2ZMV   
CATH (Classification of proteins structures)2J3T    2JSN    2ZMV   
SuperfamilyQ9Y296
Human Protein AtlasENSG00000196655
Peptide AtlasQ9Y296
HPRD18220
IPIIPI00007691   IPI00910760   IPI00982028   IPI00978646   IPI00910488   IPI00976579   IPI00980491   IPI01008937   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y296
IntAct (EBI)Q9Y296
FunCoupENSG00000196655
BioGRIDTRAPPC4
STRING (EMBL)TRAPPC4
ZODIACTRAPPC4
Ontologies - Pathways
QuickGOQ9Y296
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum  Golgi stack  cytosol  ER to Golgi vesicle-mediated transport  synaptic vesicle  dendrite development  Rab guanyl-nucleotide exchange factor activity  Rab guanyl-nucleotide exchange factor activity  TRAPP complex  dendrite  positive regulation of GTPase activity  synapse  COPII vesicle coating  membrane organization  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum  Golgi stack  cytosol  ER to Golgi vesicle-mediated transport  synaptic vesicle  dendrite development  Rab guanyl-nucleotide exchange factor activity  Rab guanyl-nucleotide exchange factor activity  TRAPP complex  dendrite  positive regulation of GTPase activity  synapse  COPII vesicle coating  membrane organization  
NDEx NetworkTRAPPC4
Atlas of Cancer Signalling NetworkTRAPPC4
Wikipedia pathwaysTRAPPC4
Orthology - Evolution
OrthoDB51399
GeneTree (enSembl)ENSG00000196655
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC4
HOVERGENQ9Y296
HOGENOMQ9Y296
Homologs : HomoloGeneTRAPPC4
Homology/Alignments : Family Browser (UCSC)TRAPPC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC4
dbVarTRAPPC4
ClinVarTRAPPC4
1000_GenomesTRAPPC4 
Exome Variant ServerTRAPPC4
ExAC (Exome Aggregation Consortium)TRAPPC4 (select the gene name)
Genetic variants : HAPMAP51399
Genomic Variants (DGV)TRAPPC4 [DGVbeta]
DECIPHERTRAPPC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC4 
Mutations
ICGC Data PortalTRAPPC4 
TCGA Data PortalTRAPPC4 
Broad Tumor PortalTRAPPC4
OASIS PortalTRAPPC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC4
DgiDB (Drug Gene Interaction Database)TRAPPC4
DoCM (Curated mutations)TRAPPC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC4 (select a term)
intoGenTRAPPC4
Cancer3DTRAPPC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610971   
Orphanet
MedgenTRAPPC4
Genetic Testing Registry TRAPPC4
NextProtQ9Y296 [Medical]
TSGene51399
GENETestsTRAPPC4
Target ValidationTRAPPC4
Huge Navigator TRAPPC4 [HugePedia]
snp3D : Map Gene to Disease51399
BioCentury BCIQTRAPPC4
ClinGenTRAPPC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51399
Chemical/Pharm GKB GenePA134906910
Clinical trialTRAPPC4
Miscellaneous
canSAR (ICR)TRAPPC4 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC4
EVEXTRAPPC4
GoPubMedTRAPPC4
iHOPTRAPPC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:36:10 CEST 2017

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