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TRAPPC5 (trafficking protein particle complex 5)

Identity

Alias_symbol (synonym)MGC52424
TRS31
Other alias
HGNC (Hugo) TRAPPC5
LocusID (NCBI) 126003
Atlas_Id 75114
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7745707 and ends at 7747748 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TRAPPC5 (19p13.2) / TRAPPC5 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC5   23067
Cards
Entrez_Gene (NCBI)TRAPPC5  126003  trafficking protein particle complex 5
AliasesTRS31
GeneCards (Weizmann)TRAPPC5
Ensembl hg19 (Hinxton)ENSG00000181029 [Gene_View]  chr19:7745707-7747748 [Contig_View]  TRAPPC5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000181029 [Gene_View]  chr19:7745707-7747748 [Contig_View]  TRAPPC5 [Vega]
ICGC DataPortalENSG00000181029
TCGA cBioPortalTRAPPC5
AceView (NCBI)TRAPPC5
Genatlas (Paris)TRAPPC5
WikiGenes126003
SOURCE (Princeton)TRAPPC5
Genetics Home Reference (NIH)TRAPPC5
Genomic and cartography
GoldenPath hg19 (UCSC)TRAPPC5  -     chr19:7745707-7747748 +  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAPPC5  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblTRAPPC5 - 19p13.2 [CytoView hg19]  TRAPPC5 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBITRAPPC5 [Mapview hg19]  TRAPPC5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK292001 BC022836 BC042161 BG528980 BI196928
RefSeq transcript (Entrez)NM_001042461 NM_001042462 NM_174894
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929413
Consensus coding sequences : CCDS (NCBI)TRAPPC5
Cluster EST : UnigeneHs.432413 [ NCBI ]
CGAP (NCI)Hs.432413
Alternative Splicing GalleryENSG00000181029
Gene ExpressionTRAPPC5 [ NCBI-GEO ]   TRAPPC5 [ EBI - ARRAY_EXPRESS ]   TRAPPC5 [ SEEK ]   TRAPPC5 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126003
GTEX Portal (Tissue expression)TRAPPC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUR0
Splice isoforms : SwissVarQ8IUR0
PhosPhoSitePlusQ8IUR0
Domains : Interpro (EBI)NO_sig/Golgi_transp_ligand-bd    TRAPP-I_su5    TRAPP_component   
Domain families : Pfam (Sanger)TRAPP (PF04051)   
Domain families : Pfam (NCBI)pfam04051   
Conserved Domain (NCBI)TRAPPC5
DMDM Disease mutations126003
Blocks (Seattle)TRAPPC5
SuperfamilyQ8IUR0
Human Protein AtlasENSG00000181029
Peptide AtlasQ8IUR0
IPIIPI00177509   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUR0
IntAct (EBI)Q8IUR0
FunCoupENSG00000181029
BioGRIDTRAPPC5
STRING (EMBL)TRAPPC5
ZODIACTRAPPC5
Ontologies - Pathways
QuickGOQ8IUR0
Ontology : AmiGOprotein binding  endoplasmic reticulum  Golgi apparatus  vesicle-mediated transport  TRAPP complex  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  Golgi apparatus  vesicle-mediated transport  TRAPP complex  
NDEx NetworkTRAPPC5
Atlas of Cancer Signalling NetworkTRAPPC5
Wikipedia pathwaysTRAPPC5
Orthology - Evolution
OrthoDB126003
GeneTree (enSembl)ENSG00000181029
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC5
HOVERGENQ8IUR0
HOGENOMQ8IUR0
Homologs : HomoloGeneTRAPPC5
Homology/Alignments : Family Browser (UCSC)TRAPPC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC5
dbVarTRAPPC5
ClinVarTRAPPC5
1000_GenomesTRAPPC5 
Exome Variant ServerTRAPPC5
ExAC (Exome Aggregation Consortium)TRAPPC5 (select the gene name)
Genetic variants : HAPMAP126003
Genomic Variants (DGV)TRAPPC5 [DGVbeta]
DECIPHER (Syndromes)19:7745707-7747748  ENSG00000181029
CONAN: Copy Number AnalysisTRAPPC5 
Mutations
ICGC Data PortalTRAPPC5 
TCGA Data PortalTRAPPC5 
Broad Tumor PortalTRAPPC5
OASIS PortalTRAPPC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC5
DgiDB (Drug Gene Interaction Database)TRAPPC5
DoCM (Curated mutations)TRAPPC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC5 (select a term)
intoGenTRAPPC5
Cancer3DTRAPPC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRAPPC5
Genetic Testing Registry TRAPPC5
NextProtQ8IUR0 [Medical]
TSGene126003
GENETestsTRAPPC5
Huge Navigator TRAPPC5 [HugePedia]
snp3D : Map Gene to Disease126003
BioCentury BCIQTRAPPC5
ClinGenTRAPPC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126003
Chemical/Pharm GKB GenePA134875218
Clinical trialTRAPPC5
Miscellaneous
canSAR (ICR)TRAPPC5 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC5
EVEXTRAPPC5
GoPubMedTRAPPC5
iHOPTRAPPC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:32 CET 2017

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