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TRAPPC5 (trafficking protein particle complex subunit 5)

Identity

Alias (NCBI)TRS31
HGNC (Hugo) TRAPPC5
HGNC Alias symbMGC52424
TRS31
LocusID (NCBI) 126003
Atlas_Id 75114
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 7680833 and ends at 7687703 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRAPPC5 (19p13.2) / TRAPPC5 (19p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRAPPC5   23067
Cards
Entrez_Gene (NCBI)TRAPPC5    trafficking protein particle complex subunit 5
AliasesTRS31
GeneCards (Weizmann)TRAPPC5
Ensembl hg19 (Hinxton)ENSG00000181029 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181029 [Gene_View]  ENSG00000181029 [Sequence]  chr19:7680833-7687703 [Contig_View]  TRAPPC5 [Vega]
ICGC DataPortalENSG00000181029
TCGA cBioPortalTRAPPC5
AceView (NCBI)TRAPPC5
Genatlas (Paris)TRAPPC5
SOURCE (Princeton)TRAPPC5
Genetics Home Reference (NIH)TRAPPC5
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC5  -     chr19:7680833-7687703 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC5  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathTRAPPC5 - 19p13.2 [CytoView hg19]  TRAPPC5 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000181029
Genome Data Viewer NCBITRAPPC5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK292001 BC022836 BC042161 BG528980 BI196928
RefSeq transcript (Entrez)NM_001042461 NM_001042462 NM_174894
Consensus coding sequences : CCDS (NCBI)TRAPPC5
Gene ExpressionTRAPPC5 [ NCBI-GEO ]   TRAPPC5 [ EBI - ARRAY_EXPRESS ]   TRAPPC5 [ SEEK ]   TRAPPC5 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC5 [ Firebrowse - Broad ]
GenevisibleExpression of TRAPPC5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126003
GTEX Portal (Tissue expression)TRAPPC5
Human Protein AtlasENSG00000181029-TRAPPC5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUR0
PhosPhoSitePlusQ8IUR0
Domains : Interpro (EBI)NO_sig/Golgi_transp_ligand-bd    TRAPP-I_su5    TRAPP_component   
Domain families : Pfam (Sanger)TRAPP (PF04051)   
Domain families : Pfam (NCBI)pfam04051   
Conserved Domain (NCBI)TRAPPC5
SuperfamilyQ8IUR0
AlphaFold pdb e-kbQ8IUR0   
Human Protein Atlas [tissue]ENSG00000181029-TRAPPC5 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q8IUR0
IntAct (EBI)Q8IUR0
BioGRIDTRAPPC5
STRING (EMBL)TRAPPC5
ZODIACTRAPPC5
Ontologies - Pathways
QuickGOQ8IUR0
Ontology : AmiGOprotein binding  endoplasmic reticulum  cytosol  endoplasmic reticulum to Golgi vesicle-mediated transport  TRAPP complex  COPII vesicle coating  TRAPPI protein complex  TRAPPII protein complex  TRAPPIII protein complex  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  cytosol  endoplasmic reticulum to Golgi vesicle-mediated transport  TRAPP complex  COPII vesicle coating  TRAPPI protein complex  TRAPPII protein complex  TRAPPIII protein complex  
NDEx NetworkTRAPPC5
Atlas of Cancer Signalling NetworkTRAPPC5
Wikipedia pathwaysTRAPPC5
Orthology - Evolution
OrthoDB126003
GeneTree (enSembl)ENSG00000181029
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC5
Homologs : HomoloGeneTRAPPC5
Homology/Alignments : Family Browser (UCSC)TRAPPC5
Gene fusions - Rearrangements
Fusion : QuiverTRAPPC5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC5
dbVarTRAPPC5
ClinVarTRAPPC5
MonarchTRAPPC5
1000_GenomesTRAPPC5 
Exome Variant ServerTRAPPC5
GNOMAD BrowserENSG00000181029
Varsome BrowserTRAPPC5
ACMGTRAPPC5 variants
VarityQ8IUR0
Genomic Variants (DGV)TRAPPC5 [DGVbeta]
DECIPHERTRAPPC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC5 
Mutations
ICGC Data PortalTRAPPC5 
TCGA Data PortalTRAPPC5 
Broad Tumor PortalTRAPPC5
OASIS PortalTRAPPC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAPPC5
Mutations and Diseases : HGMDTRAPPC5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRAPPC5
DgiDB (Drug Gene Interaction Database)TRAPPC5
DoCM (Curated mutations)TRAPPC5
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC5
Cancer3DTRAPPC5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRAPPC5
MedgenTRAPPC5
Genetic Testing Registry TRAPPC5
NextProtQ8IUR0 [Medical]
GENETestsTRAPPC5
Target ValidationTRAPPC5
Huge Navigator TRAPPC5 [HugePedia]
ClinGenTRAPPC5
Clinical trials, drugs, therapy
MyCancerGenomeTRAPPC5
Protein Interactions : CTDTRAPPC5
Pharm GKB GenePA134875218
PharosQ8IUR0
Clinical trialTRAPPC5
Miscellaneous
canSAR (ICR)TRAPPC5
HarmonizomeTRAPPC5
DataMed IndexTRAPPC5
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRAPPC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:44 CEST 2021

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