Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TRAPPC6A (trafficking protein particle complex 6A)

Identity

Alias_symbol (synonym)TRS33
MGC2650
HSPC289
Other alias
HGNC (Hugo) TRAPPC6A
LocusID (NCBI) 79090
Atlas_Id 75115
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45162928 and ends at 45178243 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRLS1 (20p12.3) / TRAPPC6A (19q13.32)MGST3 (1q24.1) / TRAPPC6A (19q13.32)SCAF1 (19q13.33) / TRAPPC6A (19q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC6A   23069
Cards
Entrez_Gene (NCBI)TRAPPC6A  79090  trafficking protein particle complex 6A
AliasesTRS33
GeneCards (Weizmann)TRAPPC6A
Ensembl hg19 (Hinxton)ENSG00000007255 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000007255 [Gene_View]  chr19:45162928-45178243 [Contig_View]  TRAPPC6A [Vega]
ICGC DataPortalENSG00000007255
TCGA cBioPortalTRAPPC6A
AceView (NCBI)TRAPPC6A
Genatlas (Paris)TRAPPC6A
WikiGenes79090
SOURCE (Princeton)TRAPPC6A
Genetics Home Reference (NIH)TRAPPC6A
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC6A  -     chr19:45162928-45178243 -  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC6A  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblTRAPPC6A - 19q13.32 [CytoView hg19]  TRAPPC6A - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBITRAPPC6A [Mapview hg19]  TRAPPC6A [Mapview hg38]
OMIM610396   
Gene and transcription
Genbank (Entrez)AF161407 BC001907 BC004450 BI462720 CN256686
RefSeq transcript (Entrez)NM_001270891 NM_001270892 NM_001270893 NM_024108
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAPPC6A
Cluster EST : UnigeneHs.466929 [ NCBI ]
CGAP (NCI)Hs.466929
Alternative Splicing GalleryENSG00000007255
Gene ExpressionTRAPPC6A [ NCBI-GEO ]   TRAPPC6A [ EBI - ARRAY_EXPRESS ]   TRAPPC6A [ SEEK ]   TRAPPC6A [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC6A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79090
GTEX Portal (Tissue expression)TRAPPC6A
Human Protein AtlasENSG00000007255-TRAPPC6A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75865   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75865  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75865
Splice isoforms : SwissVarO75865
PhosPhoSitePlusO75865
Domains : Interpro (EBI)NO_sig/Golgi_transp_ligand-bd    TRAPP_component   
Domain families : Pfam (Sanger)TRAPP (PF04051)   
Domain families : Pfam (NCBI)pfam04051   
Conserved Domain (NCBI)TRAPPC6A
DMDM Disease mutations79090
Blocks (Seattle)TRAPPC6A
PDB (SRS)2C0J    2J3T   
PDB (PDBSum)2C0J    2J3T   
PDB (IMB)2C0J    2J3T   
PDB (RSDB)2C0J    2J3T   
Structural Biology KnowledgeBase2C0J    2J3T   
SCOP (Structural Classification of Proteins)2C0J    2J3T   
CATH (Classification of proteins structures)2C0J    2J3T   
SuperfamilyO75865
Human Protein Atlas [tissue]ENSG00000007255-TRAPPC6A [tissue]
Peptide AtlasO75865
HPRD14503
IPIIPI00760921   IPI00012211   
Protein Interaction databases
DIP (DOE-UCLA)O75865
IntAct (EBI)O75865
FunCoupENSG00000007255
BioGRIDTRAPPC6A
STRING (EMBL)TRAPPC6A
ZODIACTRAPPC6A
Ontologies - Pathways
QuickGOO75865
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum  cis-Golgi network  trans-Golgi network  cytosol  ER to Golgi vesicle-mediated transport  Rab guanyl-nucleotide exchange factor activity  TRAPP complex  positive regulation of GTPase activity  COPII vesicle coating  membrane organization  melanosome assembly  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum  cis-Golgi network  trans-Golgi network  cytosol  ER to Golgi vesicle-mediated transport  Rab guanyl-nucleotide exchange factor activity  TRAPP complex  positive regulation of GTPase activity  COPII vesicle coating  membrane organization  melanosome assembly  
NDEx NetworkTRAPPC6A
Atlas of Cancer Signalling NetworkTRAPPC6A
Wikipedia pathwaysTRAPPC6A
Orthology - Evolution
OrthoDB79090
GeneTree (enSembl)ENSG00000007255
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC6A
HOVERGENO75865
HOGENOMO75865
Homologs : HomoloGeneTRAPPC6A
Homology/Alignments : Family Browser (UCSC)TRAPPC6A
Gene fusions - Rearrangements
Tumor Fusion PortalTRAPPC6A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC6A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC6A
dbVarTRAPPC6A
ClinVarTRAPPC6A
1000_GenomesTRAPPC6A 
Exome Variant ServerTRAPPC6A
ExAC (Exome Aggregation Consortium)ENSG00000007255
GNOMAD BrowserENSG00000007255
Genetic variants : HAPMAP79090
Genomic Variants (DGV)TRAPPC6A [DGVbeta]
DECIPHERTRAPPC6A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC6A 
Mutations
ICGC Data PortalTRAPPC6A 
TCGA Data PortalTRAPPC6A 
Broad Tumor PortalTRAPPC6A
OASIS PortalTRAPPC6A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC6A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC6A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC6A
DgiDB (Drug Gene Interaction Database)TRAPPC6A
DoCM (Curated mutations)TRAPPC6A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC6A (select a term)
intoGenTRAPPC6A
Cancer3DTRAPPC6A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610396   
Orphanet
DisGeNETTRAPPC6A
MedgenTRAPPC6A
Genetic Testing Registry TRAPPC6A
NextProtO75865 [Medical]
TSGene79090
GENETestsTRAPPC6A
Target ValidationTRAPPC6A
Huge Navigator TRAPPC6A [HugePedia]
snp3D : Map Gene to Disease79090
BioCentury BCIQTRAPPC6A
ClinGenTRAPPC6A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79090
Chemical/Pharm GKB GenePA134963625
Clinical trialTRAPPC6A
Miscellaneous
canSAR (ICR)TRAPPC6A (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC6A
EVEXTRAPPC6A
GoPubMedTRAPPC6A
iHOPTRAPPC6A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:40:14 CET 2017

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