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TRAPPC6B (trafficking protein particle complex 6B)

Identity

Other aliasTPC6
HGNC (Hugo) TRAPPC6B
LocusID (NCBI) 122553
Atlas_Id 75116
Location 14q21.1  [Link to chromosome band 14q21]
Location_base_pair Starts at 39617015 and ends at 39639634 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RPL38 (17q25.1) / TRAPPC6B (14q21.1)SEC23A (14q21.1) / TRAPPC6B (14q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC6B   23066
Cards
Entrez_Gene (NCBI)TRAPPC6B  122553  trafficking protein particle complex 6B
AliasesTPC6
GeneCards (Weizmann)TRAPPC6B
Ensembl hg19 (Hinxton)ENSG00000182400 [Gene_View]  chr14:39617015-39639634 [Contig_View]  TRAPPC6B [Vega]
Ensembl hg38 (Hinxton)ENSG00000182400 [Gene_View]  chr14:39617015-39639634 [Contig_View]  TRAPPC6B [Vega]
ICGC DataPortalENSG00000182400
TCGA cBioPortalTRAPPC6B
AceView (NCBI)TRAPPC6B
Genatlas (Paris)TRAPPC6B
WikiGenes122553
SOURCE (Princeton)TRAPPC6B
Genetics Home Reference (NIH)TRAPPC6B
Genomic and cartography
GoldenPath hg19 (UCSC)TRAPPC6B  -     chr14:39617015-39639634 -  14q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAPPC6B  -     14q21.1   [Description]    (hg38-Dec_2013)
EnsemblTRAPPC6B - 14q21.1 [CytoView hg19]  TRAPPC6B - 14q21.1 [CytoView hg38]
Mapping of homologs : NCBITRAPPC6B [Mapview hg19]  TRAPPC6B [Mapview hg38]
OMIM610397   
Gene and transcription
Genbank (Entrez)AK025437 AK056690 AK294339 AK310730 AK315900
RefSeq transcript (Entrez)NM_001079537 NM_177452
RefSeq genomic (Entrez)NC_000014 NC_018925 NT_026437 NW_004929393
Consensus coding sequences : CCDS (NCBI)TRAPPC6B
Cluster EST : UnigeneHs.13303 [ NCBI ]
CGAP (NCI)Hs.13303
Alternative Splicing GalleryENSG00000182400
Gene ExpressionTRAPPC6B [ NCBI-GEO ]   TRAPPC6B [ EBI - ARRAY_EXPRESS ]   TRAPPC6B [ SEEK ]   TRAPPC6B [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122553
GTEX Portal (Tissue expression)TRAPPC6B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SZ2
Splice isoforms : SwissVarQ86SZ2
PhosPhoSitePlusQ86SZ2
Domains : Interpro (EBI)NO_sig/Golgi_transp_ligand-bd    TRAPP_component   
Domain families : Pfam (Sanger)TRAPP (PF04051)   
Domain families : Pfam (NCBI)pfam04051   
Conserved Domain (NCBI)TRAPPC6B
DMDM Disease mutations122553
Blocks (Seattle)TRAPPC6B
PDB (SRS)2BJN    2CFH    3KXC   
PDB (PDBSum)2BJN    2CFH    3KXC   
PDB (IMB)2BJN    2CFH    3KXC   
PDB (RSDB)2BJN    2CFH    3KXC   
Structural Biology KnowledgeBase2BJN    2CFH    3KXC   
SCOP (Structural Classification of Proteins)2BJN    2CFH    3KXC   
CATH (Classification of proteins structures)2BJN    2CFH    3KXC   
SuperfamilyQ86SZ2
Human Protein AtlasENSG00000182400
Peptide AtlasQ86SZ2
HPRD18221
IPIIPI00384047   IPI00329125   IPI00910123   IPI01025821   IPI01025223   
Protein Interaction databases
DIP (DOE-UCLA)Q86SZ2
IntAct (EBI)Q86SZ2
FunCoupENSG00000182400
BioGRIDTRAPPC6B
STRING (EMBL)TRAPPC6B
ZODIACTRAPPC6B
Ontologies - Pathways
QuickGOQ86SZ2
Ontology : AmiGOprotein binding  endoplasmic reticulum  Golgi apparatus  vesicle-mediated transport  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  Golgi apparatus  vesicle-mediated transport  
NDEx NetworkTRAPPC6B
Atlas of Cancer Signalling NetworkTRAPPC6B
Wikipedia pathwaysTRAPPC6B
Orthology - Evolution
OrthoDB122553
GeneTree (enSembl)ENSG00000182400
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC6B
HOVERGENQ86SZ2
HOGENOMQ86SZ2
Homologs : HomoloGeneTRAPPC6B
Homology/Alignments : Family Browser (UCSC)TRAPPC6B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC6B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC6B
dbVarTRAPPC6B
ClinVarTRAPPC6B
1000_GenomesTRAPPC6B 
Exome Variant ServerTRAPPC6B
ExAC (Exome Aggregation Consortium)TRAPPC6B (select the gene name)
Genetic variants : HAPMAP122553
Genomic Variants (DGV)TRAPPC6B [DGVbeta]
DECIPHER (Syndromes)14:39617015-39639634  ENSG00000182400
CONAN: Copy Number AnalysisTRAPPC6B 
Mutations
ICGC Data PortalTRAPPC6B 
TCGA Data PortalTRAPPC6B 
Broad Tumor PortalTRAPPC6B
OASIS PortalTRAPPC6B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC6B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC6B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC6B
DgiDB (Drug Gene Interaction Database)TRAPPC6B
DoCM (Curated mutations)TRAPPC6B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC6B (select a term)
intoGenTRAPPC6B
Cancer3DTRAPPC6B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610397   
Orphanet
MedgenTRAPPC6B
Genetic Testing Registry TRAPPC6B
NextProtQ86SZ2 [Medical]
TSGene122553
GENETestsTRAPPC6B
Huge Navigator TRAPPC6B [HugePedia]
snp3D : Map Gene to Disease122553
BioCentury BCIQTRAPPC6B
ClinGenTRAPPC6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122553
Chemical/Pharm GKB GenePA134973191
Clinical trialTRAPPC6B
Miscellaneous
canSAR (ICR)TRAPPC6B (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC6B
EVEXTRAPPC6B
GoPubMedTRAPPC6B
iHOPTRAPPC6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:32 CET 2017

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