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TRAPPC8 (trafficking protein particle complex 8)

Identity

Alias_namesKIAA1012
KIAA1012
Alias_symbol (synonym)HsT2706
TRS85
GSG1
Other alias
HGNC (Hugo) TRAPPC8
LocusID (NCBI) 22878
Atlas_Id 75117
Location 18q12.1  [Link to chromosome band 18q12]
Location_base_pair Starts at 31829173 and ends at 31943128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APCDD1 (18p11.22) / TRAPPC8 (18q12.1)FAM102B (1p13.3) / TRAPPC8 (18q12.1)PARD3 (10p11.22) / TRAPPC8 (18q12.1)
TRAPPC8 (18q12.1) / ANK3 (10q21.2)TRAPPC8 (18q12.1) / DOK6 (18q22.2)TRAPPC8 (18q12.1) / RNF125 (18q12.1)
TRAPPC8 (18q12.1) / SS18 (18q11.2)TRAPPC8 (18q12.1) / TRAPPC8 (18q12.1)TRAPPC8 SS18
TRAPPC8 ANK3TRAPPC8 RNF125APCDD1 TRAPPC8
FAM102B TRAPPC8

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC8   29169
Cards
Entrez_Gene (NCBI)TRAPPC8  22878  trafficking protein particle complex 8
AliasesGSG1; HsT2706; KIAA1012; TRS85
GeneCards (Weizmann)TRAPPC8
Ensembl hg19 (Hinxton)ENSG00000153339 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153339 [Gene_View]  chr18:31829173-31943128 [Contig_View]  TRAPPC8 [Vega]
ICGC DataPortalENSG00000153339
TCGA cBioPortalTRAPPC8
AceView (NCBI)TRAPPC8
Genatlas (Paris)TRAPPC8
WikiGenes22878
SOURCE (Princeton)TRAPPC8
Genetics Home Reference (NIH)TRAPPC8
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC8  -     chr18:31829173-31943128 -  18q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC8  -     18q12.1   [Description]    (hg19-Feb_2009)
EnsemblTRAPPC8 - 18q12.1 [CytoView hg19]  TRAPPC8 - 18q12.1 [CytoView hg38]
Mapping of homologs : NCBITRAPPC8 [Mapview hg19]  TRAPPC8 [Mapview hg38]
OMIM614136   
Gene and transcription
Genbank (Entrez)AA598869 AB023229 AK001662 AK292537 AL136749
RefSeq transcript (Entrez)NM_014939
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAPPC8
Cluster EST : UnigeneHs.202001 [ NCBI ]
CGAP (NCI)Hs.202001
Alternative Splicing GalleryENSG00000153339
Gene ExpressionTRAPPC8 [ NCBI-GEO ]   TRAPPC8 [ EBI - ARRAY_EXPRESS ]   TRAPPC8 [ SEEK ]   TRAPPC8 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22878
GTEX Portal (Tissue expression)TRAPPC8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2L5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2L5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2L5
Splice isoforms : SwissVarQ9Y2L5
PhosPhoSitePlusQ9Y2L5
Domains : Interpro (EBI)TPR-like_helical_dom    TRAPP_III_complex_Trs85   
Domain families : Pfam (Sanger)TRAPPC-Trs85 (PF12739)   
Domain families : Pfam (NCBI)pfam12739   
Conserved Domain (NCBI)TRAPPC8
DMDM Disease mutations22878
Blocks (Seattle)TRAPPC8
SuperfamilyQ9Y2L5
Human Protein AtlasENSG00000153339
Peptide AtlasQ9Y2L5
HPRD10019
IPIIPI00007253   IPI00216617   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2L5
IntAct (EBI)Q9Y2L5
FunCoupENSG00000153339
BioGRIDTRAPPC8
STRING (EMBL)TRAPPC8
ZODIACTRAPPC8
Ontologies - Pathways
QuickGOQ9Y2L5
Ontology : AmiGOpre-autophagosomal structure  protein binding  cytosol  ER to Golgi vesicle-mediated transport  Rab guanyl-nucleotide exchange factor activity  pexophagy  cytoplasmic vesicle  CVT pathway  protein localization to pre-autophagosomal structure  positive regulation of GTPase activity  nucleophagy  membrane organization  TRAPPIII protein complex  
Ontology : EGO-EBIpre-autophagosomal structure  protein binding  cytosol  ER to Golgi vesicle-mediated transport  Rab guanyl-nucleotide exchange factor activity  pexophagy  cytoplasmic vesicle  CVT pathway  protein localization to pre-autophagosomal structure  positive regulation of GTPase activity  nucleophagy  membrane organization  TRAPPIII protein complex  
NDEx NetworkTRAPPC8
Atlas of Cancer Signalling NetworkTRAPPC8
Wikipedia pathwaysTRAPPC8
Orthology - Evolution
OrthoDB22878
GeneTree (enSembl)ENSG00000153339
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC8
HOVERGENQ9Y2L5
HOGENOMQ9Y2L5
Homologs : HomoloGeneTRAPPC8
Homology/Alignments : Family Browser (UCSC)TRAPPC8
Gene fusions - Rearrangements
Fusion: TCGATRAPPC8 SS18
Fusion: TCGATRAPPC8 ANK3
Fusion: TCGATRAPPC8 RNF125
Fusion: TCGAAPCDD1 TRAPPC8
Fusion: TCGAFAM102B TRAPPC8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC8
dbVarTRAPPC8
ClinVarTRAPPC8
1000_GenomesTRAPPC8 
Exome Variant ServerTRAPPC8
ExAC (Exome Aggregation Consortium)TRAPPC8 (select the gene name)
Genetic variants : HAPMAP22878
Genomic Variants (DGV)TRAPPC8 [DGVbeta]
DECIPHERTRAPPC8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC8 
Mutations
ICGC Data PortalTRAPPC8 
TCGA Data PortalTRAPPC8 
Broad Tumor PortalTRAPPC8
OASIS PortalTRAPPC8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC8
DgiDB (Drug Gene Interaction Database)TRAPPC8
DoCM (Curated mutations)TRAPPC8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC8 (select a term)
intoGenTRAPPC8
Cancer3DTRAPPC8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614136   
Orphanet
MedgenTRAPPC8
Genetic Testing Registry TRAPPC8
NextProtQ9Y2L5 [Medical]
TSGene22878
GENETestsTRAPPC8
Target ValidationTRAPPC8
Huge Navigator TRAPPC8 [HugePedia]
snp3D : Map Gene to Disease22878
BioCentury BCIQTRAPPC8
ClinGenTRAPPC8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22878
Chemical/Pharm GKB GenePA165429149
Clinical trialTRAPPC8
Miscellaneous
canSAR (ICR)TRAPPC8 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC8
EVEXTRAPPC8
GoPubMedTRAPPC8
iHOPTRAPPC8
Genes in title>/TD>=TL>automatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:25 CEST 2017

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