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TRAPPC8 (trafficking protein particle complex subunit 8)

Identity

Alias (NCBI)GSG1
HsT2706
KIAA1012
TRS85
HGNC (Hugo) TRAPPC8
HGNC Alias symbHsT2706
TRS85
GSG1
HGNC Alias namegeneral sporulation gene 1 homolog (S. cerevisiae)
HGNC Previous nameKIAA1012
HGNC Previous nameKIAA1012
LocusID (NCBI) 22878
Atlas_Id 75117
Location 18q12.1  [Link to chromosome band 18q12]
Location_base_pair Starts at 31829180 and ends at 31943128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APCDD1 (18p11.22) / TRAPPC8 (18q12.1)FAM102B (1p13.3) / TRAPPC8 (18q12.1)PARD3 (10p11.22) / TRAPPC8 (18q12.1)
TRAPPC8 (18q12.1) / ANK3 (10q21.2)TRAPPC8 (18q12.1) / DOK6 (18q22.2)TRAPPC8 (18q12.1) / RNF125 (18q12.1)
TRAPPC8 (18q12.1) / SS18 (18q11.2)TRAPPC8 (18q12.1) / TRAPPC8 (18q12.1)TRAPPC8 SS18
TRAPPC8 ANK3TRAPPC8 RNF125APCDD1 TRAPPC8
FAM102B TRAPPC8

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRAPPC8   29169
Cards
Entrez_Gene (NCBI)TRAPPC8    trafficking protein particle complex subunit 8
AliasesGSG1; HsT2706; KIAA1012; TRS85
GeneCards (Weizmann)TRAPPC8
Ensembl hg19 (Hinxton)ENSG00000153339 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000153339 [Gene_View]  ENSG00000153339 [Sequence]  chr18:31829180-31943128 [Contig_View]  TRAPPC8 [Vega]
ICGC DataPortalENSG00000153339
TCGA cBioPortalTRAPPC8
AceView (NCBI)TRAPPC8
Genatlas (Paris)TRAPPC8
SOURCE (Princeton)TRAPPC8
Genetics Home Reference (NIH)TRAPPC8
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC8  -     chr18:31829180-31943128 -  18q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC8  -     18q12.1   [Description]    (hg19-Feb_2009)
GoldenPathTRAPPC8 - 18q12.1 [CytoView hg19]  TRAPPC8 - 18q12.1 [CytoView hg38]
ImmunoBaseENSG00000153339
Genome Data Viewer NCBITRAPPC8 [Mapview hg19]  
OMIM614136   
Gene and transcription
Genbank (Entrez)AA598869 AB023229 AK001662 AK292537 AL136749
RefSeq transcript (Entrez)NM_014939
Consensus coding sequences : CCDS (NCBI)TRAPPC8
Gene ExpressionTRAPPC8 [ NCBI-GEO ]   TRAPPC8 [ EBI - ARRAY_EXPRESS ]   TRAPPC8 [ SEEK ]   TRAPPC8 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC8 [ Firebrowse - Broad ]
GenevisibleExpression of TRAPPC8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22878
GTEX Portal (Tissue expression)TRAPPC8
Human Protein AtlasENSG00000153339-TRAPPC8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2L5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2L5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2L5
PhosPhoSitePlusQ9Y2L5
Domains : Interpro (EBI)TPR-like_helical_dom_sf    TRAPP_III_complex_Trs85   
Domain families : Pfam (Sanger)TRAPPC-Trs85 (PF12739)   
Domain families : Pfam (NCBI)pfam12739   
Conserved Domain (NCBI)TRAPPC8
SuperfamilyQ9Y2L5
AlphaFold pdb e-kbQ9Y2L5   
Human Protein Atlas [tissue]ENSG00000153339-TRAPPC8 [tissue]
HPRD10019
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2L5
IntAct (EBI)Q9Y2L5
BioGRIDTRAPPC8
STRING (EMBL)TRAPPC8
ZODIACTRAPPC8
Ontologies - Pathways
QuickGOQ9Y2L5
Ontology : AmiGOphagophore assembly site  protein binding  cytosol  endoplasmic reticulum to Golgi vesicle-mediated transport  Golgi organization  TRAPP complex  autophagy of peroxisome  cytoplasmic vesicle  protein localization to phagophore assembly site  TRAPPIII protein complex  
Ontology : EGO-EBIphagophore assembly site  protein binding  cytosol  endoplasmic reticulum to Golgi vesicle-mediated transport  Golgi organization  TRAPP complex  autophagy of peroxisome  cytoplasmic vesicle  protein localization to phagophore assembly site  TRAPPIII protein complex  
NDEx NetworkTRAPPC8
Atlas of Cancer Signalling NetworkTRAPPC8
Wikipedia pathwaysTRAPPC8
Orthology - Evolution
OrthoDB22878
GeneTree (enSembl)ENSG00000153339
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC8
Homologs : HomoloGeneTRAPPC8
Homology/Alignments : Family Browser (UCSC)TRAPPC8
Gene fusions - Rearrangements
Fusion : QuiverTRAPPC8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC8
dbVarTRAPPC8
ClinVarTRAPPC8
MonarchTRAPPC8
1000_GenomesTRAPPC8 
Exome Variant ServerTRAPPC8
GNOMAD BrowserENSG00000153339
Varsome BrowserTRAPPC8
ACMGTRAPPC8 variants
VarityQ9Y2L5
Genomic Variants (DGV)TRAPPC8 [DGVbeta]
DECIPHERTRAPPC8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC8 
Mutations
ICGC Data PortalTRAPPC8 
TCGA Data PortalTRAPPC8 
Broad Tumor PortalTRAPPC8
OASIS PortalTRAPPC8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAPPC8
Mutations and Diseases : HGMDTRAPPC8
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRAPPC8
DgiDB (Drug Gene Interaction Database)TRAPPC8
DoCM (Curated mutations)TRAPPC8
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC8
Cancer3DTRAPPC8
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614136   
Orphanet
DisGeNETTRAPPC8
MedgenTRAPPC8
Genetic Testing Registry TRAPPC8
NextProtQ9Y2L5 [Medical]
GENETestsTRAPPC8
Target ValidationTRAPPC8
Huge Navigator TRAPPC8 [HugePedia]
ClinGenTRAPPC8
Clinical trials, drugs, therapy
MyCancerGenomeTRAPPC8
Protein Interactions : CTDTRAPPC8
Pharm GKB GenePA165429149
PharosQ9Y2L5
Clinical trialTRAPPC8
Miscellaneous
canSAR (ICR)TRAPPC8
HarmonizomeTRAPPC8
DataMed IndexTRAPPC8
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRAPPC8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:45 CEST 2021

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