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TRAPPC9 (trafficking protein particle complex subunit 9)

Identity

Alias (NCBI)IBP
IKBKBBP
MRT13
NIBP
T1
TRS120
HGNC (Hugo) TRAPPC9
HGNC Alias symbIKBKBBP
NIBP
KIAA1882
T1
TRS120
MRT13
HGNC Alias nameTRAPP 120 kDa subunit
 tularik gene 1
HGNC Previous nametrafficking protein particle complex 9
LocusID (NCBI) 83696
Atlas_Id 47452
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 139727726 and ends at 140458579 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGO2 (8q24.3) / TRAPPC9 (8q24.3)CIAO1 (2q11.2) / TRAPPC9 (8q24.3)GRHL2 (8q22.3) / TRAPPC9 (8q24.3)
LIMA1 (12q13.12) / TRAPPC9 (8q24.3)LRP12 (8q22.3) / TRAPPC9 (8q24.3)PPM1D (17q23.2) / TRAPPC9 (8q24.3)
PTK2 (8q24.3) / TRAPPC9 (8q24.3)RAB2A (8q12.1) / TRAPPC9 (8q24.3)TRAPPC9 (8q24.3) / AGO2 (8q24.3)
TRAPPC9 (8q24.3) / C2CD5 (12p12.1)TRAPPC9 (8q24.3) / COL22A1 (8q24.23)TRAPPC9 (8q24.3) / IKBKB (8p11.21)
TRAPPC9 (8q24.3) / KCNK9 (8q24.3)TRAPPC9 (8q24.3) / LIMA1 (12q13.12)TRAPPC9 (8q24.3) / PSKH2 (8q21.3)
TRAPPC9 (8q24.3) / PTK2 (8q24.3)TRAPPC9 (8q24.3) / SLC45A4 (8q24.3)TRAPPC9 (8q24.3) / SPTAN1 (9q34.11)
TRAPPC9 (8q24.3) / TRAPPC9 (8q24.3)TRAPPC9 (8q24.3) / VSTM4 (10q11.23)XPO1 (2p15) / TRAPPC9 (8q24.3)
GRHL2 8q22.3 / TRAPPC9 8q24.3LIMA1 12q13.12 / TRAPPC9 8q24.3LRP12 8q22.3 / TRAPPC9 8q24.3
PTK2 8q24.3 / TRAPPC9 8q24.3RAB2A 8q12.1 / TRAPPC9 8q24.3TRAPPC9 8q24.3 / COL22A1 8q24.23
TRAPPC9 8q24.3 EIF2C2TRAPPC9 8q24.3 KIAA0528TRAPPC9 8q24.3 / LIMA1 12q13.12
TRAPPC9 8q24.3 / PSKH2 8q21.3TRAPPC9 8q24.3 / PTK2 8q24.3TRAPPC9 8q24.3 / SLC45A4 8q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRAPPC9   30832
LRG (Locus Reference Genomic)LRG_1041
Cards
Entrez_Gene (NCBI)TRAPPC9    trafficking protein particle complex subunit 9
AliasesIBP; IKBKBBP; MRT13; NIBP; 
T1; TRS120
GeneCards (Weizmann)TRAPPC9
Ensembl hg19 (Hinxton)ENSG00000167632 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167632 [Gene_View]  ENSG00000167632 [Sequence]  chr8:139727726-140458579 [Contig_View]  TRAPPC9 [Vega]
ICGC DataPortalENSG00000167632
TCGA cBioPortalTRAPPC9
AceView (NCBI)TRAPPC9
Genatlas (Paris)TRAPPC9
SOURCE (Princeton)TRAPPC9
Genetics Home Reference (NIH)TRAPPC9
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC9  -     chr8:139727726-140458579 -  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC9  -     8q24.3   [Description]    (hg19-Feb_2009)
GoldenPathTRAPPC9 - 8q24.3 [CytoView hg19]  TRAPPC9 - 8q24.3 [CytoView hg38]
ImmunoBaseENSG00000167632
Genome Data Viewer NCBITRAPPC9 [Mapview hg19]  
OMIM611966   613192   
Gene and transcription
Genbank (Entrez)AA863329 AB067469 AK026394 AK027689 AK128755
RefSeq transcript (Entrez)NM_001160372 NM_001321646 NM_001374682 NM_001374683 NM_001374684 NM_031466
Consensus coding sequences : CCDS (NCBI)TRAPPC9
Gene ExpressionTRAPPC9 [ NCBI-GEO ]   TRAPPC9 [ EBI - ARRAY_EXPRESS ]   TRAPPC9 [ SEEK ]   TRAPPC9 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC9 [ Firebrowse - Broad ]
GenevisibleExpression of TRAPPC9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83696
GTEX Portal (Tissue expression)TRAPPC9
Human Protein AtlasENSG00000167632-TRAPPC9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96Q05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96Q05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96Q05
PhosPhoSitePlusQ96Q05
Domains : Interpro (EBI)TRAPP_II_complex_Trs120   
Domain families : Pfam (Sanger)TRAPPC9-Trs120 (PF08626)   
Domain families : Pfam (NCBI)pfam08626   
Conserved Domain (NCBI)TRAPPC9
SuperfamilyQ96Q05
AlphaFold pdb e-kbQ96Q05   
Human Protein Atlas [tissue]ENSG00000167632-TRAPPC9 [tissue]
HPRD18136
Protein Interaction databases
DIP (DOE-UCLA)Q96Q05
IntAct (EBI)Q96Q05
BioGRIDTRAPPC9
STRING (EMBL)TRAPPC9
ZODIACTRAPPC9
Ontologies - Pathways
QuickGOQ96Q05
Ontology : AmiGOprotein binding  endoplasmic reticulum  trans-Golgi network  cytosol  cerebral cortex development  TRAPP complex  neuron differentiation  COPII vesicle coating  positive regulation of NF-kappaB transcription factor activity  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  trans-Golgi network  cytosol  cerebral cortex development  TRAPP complex  neuron differentiation  COPII vesicle coating  positive regulation of NF-kappaB transcription factor activity  
NDEx NetworkTRAPPC9
Atlas of Cancer Signalling NetworkTRAPPC9
Wikipedia pathwaysTRAPPC9
Orthology - Evolution
OrthoDB83696
GeneTree (enSembl)ENSG00000167632
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC9
Homologs : HomoloGeneTRAPPC9
Homology/Alignments : Family Browser (UCSC)TRAPPC9
Gene fusions - Rearrangements
Fusion : MitelmanGRHL2/TRAPPC9 [8q22.3/8q24.3]  
Fusion : MitelmanLIMA1/TRAPPC9 [12q13.12/8q24.3]  
Fusion : MitelmanLRP12/TRAPPC9 [8q22.3/8q24.3]  
Fusion : MitelmanPTK2/TRAPPC9 [8q24.3/8q24.3]  
Fusion : MitelmanRAB2A/TRAPPC9 [8q12.1/8q24.3]  
Fusion : MitelmanTRAPPC9/AGO2 [8q24.3/8q24.3]  
Fusion : MitelmanTRAPPC9/C2CD5 [8q24.3/12p12.1]  
Fusion : MitelmanTRAPPC9/COL22A1 [8q24.3/8q24.23]  
Fusion : MitelmanTRAPPC9/LIMA1 [8q24.3/12q13.12]  
Fusion : MitelmanTRAPPC9/PSKH2 [8q24.3/8q21.3]  
Fusion : MitelmanTRAPPC9/PTK2 [8q24.3/8q24.3]  
Fusion : MitelmanTRAPPC9/SLC45A4 [8q24.3/8q24.3]  
Fusion : QuiverTRAPPC9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC9
dbVarTRAPPC9
ClinVarTRAPPC9
MonarchTRAPPC9
1000_GenomesTRAPPC9 
Exome Variant ServerTRAPPC9
GNOMAD BrowserENSG00000167632
Varsome BrowserTRAPPC9
ACMGTRAPPC9 variants
VarityQ96Q05
Genomic Variants (DGV)TRAPPC9 [DGVbeta]
DECIPHERTRAPPC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC9 
Mutations
ICGC Data PortalTRAPPC9 
TCGA Data PortalTRAPPC9 
Broad Tumor PortalTRAPPC9
OASIS PortalTRAPPC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAPPC9
Mutations and Diseases : HGMDTRAPPC9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRAPPC9
DgiDB (Drug Gene Interaction Database)TRAPPC9
DoCM (Curated mutations)TRAPPC9
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC9
Cancer3DTRAPPC9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611966    613192   
Orphanet22075    11804   
DisGeNETTRAPPC9
MedgenTRAPPC9
Genetic Testing Registry TRAPPC9
NextProtQ96Q05 [Medical]
GENETestsTRAPPC9
Target ValidationTRAPPC9
Huge Navigator TRAPPC9 [HugePedia]
ClinGenTRAPPC9 (curated)
Clinical trials, drugs, therapy
MyCancerGenomeTRAPPC9
Protein Interactions : CTDTRAPPC9
Pharm GKB GenePA162406921
PharosQ96Q05
Clinical trialTRAPPC9
Miscellaneous
canSAR (ICR)TRAPPC9
HarmonizomeTRAPPC9
DataMed IndexTRAPPC9
Probes
Litterature
PubMed63 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRAPPC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:12 CEST 2021

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