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TRAPPC9 (trafficking protein particle complex 9)

Identity

Alias_symbol (synonym)IKBKBBP
NIBP
KIAA1882
T1
TRS120
MRT13
Other aliasIBP
HGNC (Hugo) TRAPPC9
LocusID (NCBI) 83696
Atlas_Id 47452
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 140742586 and ends at 141467861 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AGO2 (8q24.3) / TRAPPC9 (8q24.3)CIAO1 (2q11.2) / TRAPPC9 (8q24.3)GRHL2 (8q22.3) / TRAPPC9 (8q24.3)
LIMA1 (12q13.12) / TRAPPC9 (8q24.3)LRP12 (8q22.3) / TRAPPC9 (8q24.3)PPM1D (17q23.2) / TRAPPC9 (8q24.3)
PTK2 (8q24.3) / TRAPPC9 (8q24.3)RAB2A (8q12.1) / TRAPPC9 (8q24.3)TRAPPC9 (8q24.3) / AGO2 (8q24.3)
TRAPPC9 (8q24.3) / C2CD5 (12p12.1)TRAPPC9 (8q24.3) / COL22A1 (8q24.23)TRAPPC9 (8q24.3) / IKBKB (8p11.21)
TRAPPC9 (8q24.3) / KCNK9 (8q24.3)TRAPPC9 (8q24.3) / LIMA1 (12q13.12)TRAPPC9 (8q24.3) / PSKH2 (8q21.3)
TRAPPC9 (8q24.3) / PTK2 (8q24.3)TRAPPC9 (8q24.3) / SLC45A4 (8q24.3)TRAPPC9 (8q24.3) / SPTAN1 (9q34.11)
TRAPPC9 (8q24.3) / TRAPPC9 (8q24.3)TRAPPC9 (8q24.3) / VSTM4 (10q11.23)XPO1 (2p15) / TRAPPC9 (8q24.3)
GRHL2 8q22.3 / TRAPPC9 8q24.3LIMA1 12q13.12 / TRAPPC9 8q24.3LRP12 8q22.3 / TRAPPC9 8q24.3
PTK2 8q24.3 / TRAPPC9 8q24.3RAB2A 8q12.1 / TRAPPC9 8q24.3TRAPPC9 8q24.3 / COL22A1 8q24.23
TRAPPC9 8q24.3 EIF2C2TRAPPC9 8q24.3 KIAA0528TRAPPC9 8q24.3 / LIMA1 12q13.12
TRAPPC9 8q24.3 / PSKH2 8q21.3TRAPPC9 8q24.3 / PTK2 8q24.3TRAPPC9 8q24.3 / SLC45A4 8q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRAPPC9   30832
LRG (Locus Reference Genomic)LRG_1041
Cards
Entrez_Gene (NCBI)TRAPPC9  83696  trafficking protein particle complex 9
AliasesIBP; IKBKBBP; MRT13; NIBP; 
T1; TRS120
GeneCards (Weizmann)TRAPPC9
Ensembl hg19 (Hinxton)ENSG00000167632 [Gene_View]  chr8:140742586-141467861 [Contig_View]  TRAPPC9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167632 [Gene_View]  chr8:140742586-141467861 [Contig_View]  TRAPPC9 [Vega]
ICGC DataPortalENSG00000167632
TCGA cBioPortalTRAPPC9
AceView (NCBI)TRAPPC9
Genatlas (Paris)TRAPPC9
WikiGenes83696
SOURCE (Princeton)TRAPPC9
Genetics Home Reference (NIH)TRAPPC9
Genomic and cartography
GoldenPath hg19 (UCSC)TRAPPC9  -     chr8:140742586-141467861 -  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRAPPC9  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblTRAPPC9 - 8q24.3 [CytoView hg19]  TRAPPC9 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBITRAPPC9 [Mapview hg19]  TRAPPC9 [Mapview hg38]
OMIM611966   613192   
Gene and transcription
Genbank (Entrez)AA863329 AB067469 AK026394 AK027689 AK128755
RefSeq transcript (Entrez)NM_001160372 NM_001321646 NM_031466
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_016478 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)TRAPPC9
Cluster EST : UnigeneHs.733622 [ NCBI ]
CGAP (NCI)Hs.733622
Alternative Splicing GalleryENSG00000167632
Gene ExpressionTRAPPC9 [ NCBI-GEO ]   TRAPPC9 [ EBI - ARRAY_EXPRESS ]   TRAPPC9 [ SEEK ]   TRAPPC9 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83696
GTEX Portal (Tissue expression)TRAPPC9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96Q05   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96Q05  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96Q05
Splice isoforms : SwissVarQ96Q05
PhosPhoSitePlusQ96Q05
Domains : Interpro (EBI)TRAPP_II_complex_Trs120   
Domain families : Pfam (Sanger)TRAPPC9-Trs120 (PF08626)   
Domain families : Pfam (NCBI)pfam08626   
Conserved Domain (NCBI)TRAPPC9
DMDM Disease mutations83696
Blocks (Seattle)TRAPPC9
SuperfamilyQ96Q05
Human Protein AtlasENSG00000167632
Peptide AtlasQ96Q05
HPRD18136
IPIIPI00940268   IPI00790904   IPI00181881   
Protein Interaction databases
DIP (DOE-UCLA)Q96Q05
IntAct (EBI)Q96Q05
FunCoupENSG00000167632
BioGRIDTRAPPC9
STRING (EMBL)TRAPPC9
ZODIACTRAPPC9
Ontologies - Pathways
QuickGOQ96Q05
Ontology : AmiGOGolgi membrane  endoplasmic reticulum  trans-Golgi network  cytosol  cerebral cortex development  neuron differentiation  COPII vesicle coating  positive regulation of NF-kappaB transcription factor activity  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum  trans-Golgi network  cytosol  cerebral cortex development  neuron differentiation  COPII vesicle coating  positive regulation of NF-kappaB transcription factor activity  
NDEx NetworkTRAPPC9
Atlas of Cancer Signalling NetworkTRAPPC9
Wikipedia pathwaysTRAPPC9
Orthology - Evolution
OrthoDB83696
GeneTree (enSembl)ENSG00000167632
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC9
HOVERGENQ96Q05
HOGENOMQ96Q05
Homologs : HomoloGeneTRAPPC9
Homology/Alignments : Family Browser (UCSC)TRAPPC9
Gene fusions - Rearrangements
Fusion : MitelmanGRHL2/TRAPPC9 [8q22.3/8q24.3]  [t(8;8)(q22;q24)]  
Fusion : MitelmanLIMA1/TRAPPC9 [12q13.12/8q24.3]  [t(8;12)(q24;q13)]  
Fusion : MitelmanLRP12/TRAPPC9 [8q22.3/8q24.3]  [t(8;8)(q22;q24)]  
Fusion : MitelmanPTK2/TRAPPC9 [8q24.3/8q24.3]  [t(8;8)(q24;q24)]  
Fusion : MitelmanRAB2A/TRAPPC9 [8q12.1/8q24.3]  [t(8;8)(q12;q24)]  
Fusion : MitelmanTRAPPC9/AGO2 [8q24.3/8q24.3]  [t(8;8)(q24;q24)]  
Fusion : MitelmanTRAPPC9/C2CD5 [8q24.3/12p12.1]  [t(8;12)(q24;p12)]  
Fusion : MitelmanTRAPPC9/COL22A1 [8q24.3/8q24.23]  [t(8;8)(q24;q24)]  
Fusion : MitelmanTRAPPC9/LIMA1 [8q24.3/12q13.12]  [t(8;12)(q24;q13)]  
Fusion : MitelmanTRAPPC9/PSKH2 [8q24.3/8q21.3]  [t(8;8)(q21;q24)]  
Fusion : MitelmanTRAPPC9/PTK2 [8q24.3/8q24.3]  [t(8;8)(q24;q24)]  
Fusion : MitelmanTRAPPC9/SLC45A4 [8q24.3/8q24.3]  [t(8;8)(q24;q24)]  
Fusion: TCGAGRHL2 8q22.3 TRAPPC9 8q24.3 BRCA
Fusion: TCGALIMA1 12q13.12 TRAPPC9 8q24.3 BRCA
Fusion: TCGALRP12 8q22.3 TRAPPC9 8q24.3 BRCA
Fusion: TCGAPTK2 8q24.3 TRAPPC9 8q24.3 LUAD
Fusion: TCGARAB2A 8q12.1 TRAPPC9 8q24.3 BRCA
Fusion: TCGATRAPPC9 8q24.3 COL22A1 8q24.23 BRCA
Fusion: TCGATRAPPC9 8q24.3 EIF2C2 BLCA
Fusion: TCGATRAPPC9 8q24.3 KIAA0528 LUAD
Fusion: TCGATRAPPC9 8q24.3 LIMA1 12q13.12 BRCA
Fusion: TCGATRAPPC9 8q24.3 PSKH2 8q21.3 LUAD
Fusion: TCGATRAPPC9 8q24.3 PTK2 8q24.3 HNSC
Fusion: TCGATRAPPC9 8q24.3 SLC45A4 8q24.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC9
dbVarTRAPPC9
ClinVarTRAPPC9
1000_GenomesTRAPPC9 
Exome Variant ServerTRAPPC9
ExAC (Exome Aggregation Consortium)TRAPPC9 (select the gene name)
Genetic variants : HAPMAP83696
Genomic Variants (DGV)TRAPPC9 [DGVbeta]
DECIPHER (Syndromes)8:140742586-141467861  ENSG00000167632
CONAN: Copy Number AnalysisTRAPPC9 
Mutations
ICGC Data PortalTRAPPC9 
TCGA Data PortalTRAPPC9 
Broad Tumor PortalTRAPPC9
OASIS PortalTRAPPC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRAPPC9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC9
DgiDB (Drug Gene Interaction Database)TRAPPC9
DoCM (Curated mutations)TRAPPC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC9 (select a term)
intoGenTRAPPC9
Cancer3DTRAPPC9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611966    613192   
Orphanet22075    11804   
MedgenTRAPPC9
Genetic Testing Registry TRAPPC9
NextProtQ96Q05 [Medical]
TSGene83696
GENETestsTRAPPC9
Huge Navigator TRAPPC9 [HugePedia]
snp3D : Map Gene to Disease83696
BioCentury BCIQTRAPPC9
ClinGenTRAPPC9 (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83696
Chemical/Pharm GKB GenePA162406921
Clinical trialTRAPPC9
Miscellaneous
canSAR (ICR)TRAPPC9 (select the gene name)
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC9
EVEXTRAPPC9
GoPubMedTRAPPC9
iHOPTRAPPC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:21 CEST 2017

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