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TRARG1 (trafficking regulator of GLUT4 (SLC2A4) 1)

Identity

Alias (NCBI)BEC-1
DSPB1
IFITMD3
LOST1
TUSC5
HGNC (Hugo) TRARG1
HGNC Alias symbLOST1
IFITMD3
BEC-1
DSPB1
HGNC Alias namelocated at seventeen p thirteen point three 1
 interferon induced transmembrane protein domain containing 3
 dispanin subfamily B member 1
 brain endothelial cell derived gene-1
HGNC Previous nameTUSC5
HGNC Previous nametumor suppressor candidate 5
LocusID (NCBI) 286753
Atlas_Id 42898
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 1279662 and ends at 1300978 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAND1 12q14.3 / TUSC5 17p13.3
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TRARG1   29592
Cards
Entrez_Gene (NCBI)TRARG1    trafficking regulator of GLUT4 (SLC2A4) 1
AliasesBEC-1; DSPB1; IFITMD3; LOST1; 
TUSC5
GeneCards (Weizmann)TRARG1
Ensembl hg19 (Hinxton)ENSG00000184811 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184811 [Gene_View]  ENSG00000184811 [Sequence]  chr17:1279662-1300978 [Contig_View]  TRARG1 [Vega]
ICGC DataPortalENSG00000184811
TCGA cBioPortalTRARG1
AceView (NCBI)TRARG1
Genatlas (Paris)TRARG1
SOURCE (Princeton)TRARG1
Genetics Home Reference (NIH)TRARG1
Genomic and cartography
GoldenPath hg38 (UCSC)TRARG1  -     chr17:1279662-1300978 +  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRARG1  -     17p13.3   [Description]    (hg19-Feb_2009)
GoldenPathTRARG1 - 17p13.3 [CytoView hg19]  TRARG1 - 17p13.3 [CytoView hg38]
ImmunoBaseENSG00000184811
Genome Data Viewer NCBITRARG1 [Mapview hg19]  
OMIM612211   
Gene and transcription
Genbank (Entrez)AB090231 AL831929 BC142615
RefSeq transcript (Entrez)NM_172367
Consensus coding sequences : CCDS (NCBI)TRARG1
Gene ExpressionTRARG1 [ NCBI-GEO ]   TRARG1 [ EBI - ARRAY_EXPRESS ]   TRARG1 [ SEEK ]   TRARG1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRARG1 [ Firebrowse - Broad ]
GenevisibleExpression of TRARG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286753
GTEX Portal (Tissue expression)TRARG1
Human Protein AtlasENSG00000184811-TRARG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IXB3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IXB3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IXB3
PhosPhoSitePlusQ8IXB3
Domains : Interpro (EBI)CD225/Dispanin_fam   
Domain families : Pfam (Sanger)CD225 (PF04505)   
Domain families : Pfam (NCBI)pfam04505   
Conserved Domain (NCBI)TRARG1
SuperfamilyQ8IXB3
AlphaFold pdb e-kbQ8IXB3   
Human Protein Atlas [tissue]ENSG00000184811-TRARG1 [tissue]
HPRD18248
Protein Interaction databases
DIP (DOE-UCLA)Q8IXB3
IntAct (EBI)Q8IXB3
BioGRIDTRARG1
STRING (EMBL)TRARG1
ZODIACTRARG1
Ontologies - Pathways
QuickGOQ8IXB3
Ontology : AmiGOplasma membrane  endomembrane system  membrane  integral component of membrane  cytoplasmic vesicle membrane  cellular response to insulin stimulus  glucose import in response to insulin stimulus  perinuclear region of cytoplasm  protein localization to plasma membrane  endosome to plasma membrane protein transport  
Ontology : EGO-EBIplasma membrane  endomembrane system  membrane  integral component of membrane  cytoplasmic vesicle membrane  cellular response to insulin stimulus  glucose import in response to insulin stimulus  perinuclear region of cytoplasm  protein localization to plasma membrane  endosome to plasma membrane protein transport  
NDEx NetworkTRARG1
Atlas of Cancer Signalling NetworkTRARG1
Wikipedia pathwaysTRARG1
Orthology - Evolution
OrthoDB286753
GeneTree (enSembl)ENSG00000184811
Phylogenetic Trees/Animal Genes : TreeFamTRARG1
Homologs : HomoloGeneTRARG1
Homology/Alignments : Family Browser (UCSC)TRARG1
Gene fusions - Rearrangements
Fusion : MitelmanCAND1/TUSC5 [12q14.3/17p13.3]  
Fusion : QuiverTRARG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRARG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRARG1
dbVarTRARG1
ClinVarTRARG1
MonarchTRARG1
1000_GenomesTRARG1 
Exome Variant ServerTRARG1
GNOMAD BrowserENSG00000184811
Varsome BrowserTRARG1
ACMGTRARG1 variants
VarityQ8IXB3
Genomic Variants (DGV)TRARG1 [DGVbeta]
DECIPHERTRARG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRARG1 
Mutations
ICGC Data PortalTRARG1 
TCGA Data PortalTRARG1 
Broad Tumor PortalTRARG1
OASIS PortalTRARG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRARG1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRARG1
Mutations and Diseases : HGMDTRARG1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRARG1
DgiDB (Drug Gene Interaction Database)TRARG1
DoCM (Curated mutations)TRARG1
CIViC (Clinical Interpretations of Variants in Cancer)TRARG1
Cancer3DTRARG1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612211   
Orphanet
DisGeNETTRARG1
MedgenTRARG1
Genetic Testing Registry TRARG1
NextProtQ8IXB3 [Medical]
GENETestsTRARG1
Target ValidationTRARG1
Huge Navigator TRARG1 [HugePedia]
ClinGenTRARG1
Clinical trials, drugs, therapy
MyCancerGenomeTRARG1
Protein Interactions : CTDTRARG1
Pharm GKB GenePA134868023
PharosQ8IXB3
Clinical trialTRARG1
Miscellaneous
canSAR (ICR)TRARG1
HarmonizomeTRARG1
DataMed IndexTRARG1
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRARG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:12 CEST 2021

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