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TRAT1 (T cell receptor associated transmembrane adaptor 1)

Identity

Alias (NCBI)HSPC062
TCRIM
TRIM
pp29/30
HGNC (Hugo) TRAT1
HGNC Alias symbHSPC062
TRIM
HGNC Previous nameTCRIM
HGNC Previous nameTCRIM
LocusID (NCBI) 50852
Atlas_Id 53544
Location 3q13.13  [Link to chromosome band 3q13]
Location_base_pair Starts at 108822786 and ends at 108855005 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRAT1   30698
Cards
Entrez_Gene (NCBI)TRAT1    T cell receptor associated transmembrane adaptor 1
AliasesHSPC062; TCRIM; TRIM; pp29/30
GeneCards (Weizmann)TRAT1
Ensembl hg19 (Hinxton)ENSG00000163519 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163519 [Gene_View]  ENSG00000163519 [Sequence]  chr3:108822786-108855005 [Contig_View]  TRAT1 [Vega]
ICGC DataPortalENSG00000163519
TCGA cBioPortalTRAT1
AceView (NCBI)TRAT1
Genatlas (Paris)TRAT1
SOURCE (Princeton)TRAT1
Genetics Home Reference (NIH)TRAT1
Genomic and cartography
GoldenPath hg38 (UCSC)TRAT1  -     chr3:108822786-108855005 +  3q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAT1  -     3q13.13   [Description]    (hg19-Feb_2009)
GoldenPathTRAT1 - 3q13.13 [CytoView hg19]  TRAT1 - 3q13.13 [CytoView hg38]
ImmunoBaseENSG00000163519
Genome Data Viewer NCBITRAT1 [Mapview hg19]  
OMIM604962   
Gene and transcription
Genbank (Entrez)AF161547 AJ224878 AJ240085 AK291991 AV735609
RefSeq transcript (Entrez)NM_001317747 NM_016388
Consensus coding sequences : CCDS (NCBI)TRAT1
Gene ExpressionTRAT1 [ NCBI-GEO ]   TRAT1 [ EBI - ARRAY_EXPRESS ]   TRAT1 [ SEEK ]   TRAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAT1 [ Firebrowse - Broad ]
GenevisibleExpression of TRAT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50852
GTEX Portal (Tissue expression)TRAT1
Human Protein AtlasENSG00000163519-TRAT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIZ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIZ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIZ9
PhosPhoSitePlusQ6PIZ9
Domains : Interpro (EBI)T-cell_rcpt-assoc_TM_adapter-1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRAT1
SuperfamilyQ6PIZ9
AlphaFold pdb e-kbQ6PIZ9   
Human Protein Atlas [tissue]ENSG00000163519-TRAT1 [tissue]
HPRD05392
Protein Interaction databases
DIP (DOE-UCLA)Q6PIZ9
IntAct (EBI)Q6PIZ9
BioGRIDTRAT1
STRING (EMBL)TRAT1
ZODIACTRAT1
Ontologies - Pathways
QuickGOQ6PIZ9
Ontology : AmiGOnegative regulation of receptor recycling  adaptive immune response  transmembrane receptor protein tyrosine kinase adaptor activity  protein binding  plasma membrane  plasma membrane  integral component of plasma membrane  cellular defense response  signal transduction  transmembrane receptor protein tyrosine kinase signaling pathway  centriolar satellite  T cell receptor complex  positive regulation of calcium-mediated signaling  T cell receptor signaling pathway  positive regulation of T cell receptor signaling pathway  negative regulation of transport  positive regulation of protein kinase B signaling  mitotic spindle  
Ontology : EGO-EBInegative regulation of receptor recycling  adaptive immune response  transmembrane receptor protein tyrosine kinase adaptor activity  protein binding  plasma membrane  plasma membrane  integral component of plasma membrane  cellular defense response  signal transduction  transmembrane receptor protein tyrosine kinase signaling pathway  centriolar satellite  T cell receptor complex  positive regulation of calcium-mediated signaling  T cell receptor signaling pathway  positive regulation of T cell receptor signaling pathway  negative regulation of transport  positive regulation of protein kinase B signaling  mitotic spindle  
NDEx NetworkTRAT1
Atlas of Cancer Signalling NetworkTRAT1
Wikipedia pathwaysTRAT1
Orthology - Evolution
OrthoDB50852
GeneTree (enSembl)ENSG00000163519
Phylogenetic Trees/Animal Genes : TreeFamTRAT1
Homologs : HomoloGeneTRAT1
Homology/Alignments : Family Browser (UCSC)TRAT1
Gene fusions - Rearrangements
Fusion : QuiverTRAT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAT1
dbVarTRAT1
ClinVarTRAT1
MonarchTRAT1
1000_GenomesTRAT1 
Exome Variant ServerTRAT1
GNOMAD BrowserENSG00000163519
Varsome BrowserTRAT1
ACMGTRAT1 variants
VarityQ6PIZ9
Genomic Variants (DGV)TRAT1 [DGVbeta]
DECIPHERTRAT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAT1 
Mutations
ICGC Data PortalTRAT1 
TCGA Data PortalTRAT1 
Broad Tumor PortalTRAT1
OASIS PortalTRAT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAT1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAT1
Mutations and Diseases : HGMDTRAT1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRAT1
DgiDB (Drug Gene Interaction Database)TRAT1
DoCM (Curated mutations)TRAT1
CIViC (Clinical Interpretations of Variants in Cancer)TRAT1
Cancer3DTRAT1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604962   
Orphanet
DisGeNETTRAT1
MedgenTRAT1
Genetic Testing Registry TRAT1
NextProtQ6PIZ9 [Medical]
GENETestsTRAT1
Target ValidationTRAT1
Huge Navigator TRAT1 [HugePedia]
ClinGenTRAT1
Clinical trials, drugs, therapy
MyCancerGenomeTRAT1
Protein Interactions : CTDTRAT1
Pharm GKB GenePA128394655
PharosQ6PIZ9
Clinical trialTRAT1
Miscellaneous
canSAR (ICR)TRAT1
HarmonizomeTRAT1
DataMed IndexTRAT1
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:13 CEST 2021

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