Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRAV12-2 (T cell receptor alpha variable 12-2)

Identity

Other aliasTCRAV12S2
TCRAV2S1
TRAV122
HGNC (Hugo) TRAV12-2
LocusID (NCBI) 28673
Atlas_Id 75118
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 21887848 and ends at 21888500 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRAV12-2   12106
Cards
Entrez_Gene (NCBI)TRAV12-2  28673  T cell receptor alpha variable 12-2
AliasesTCRAV12S2; TCRAV2S1; TRAV122
GeneCards (Weizmann)TRAV12-2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr14:21887848-21888500 [Contig_View]  TRAV12-2 [Vega]
TCGA cBioPortalTRAV12-2
AceView (NCBI)TRAV12-2
Genatlas (Paris)TRAV12-2
WikiGenes28673
SOURCE (Princeton)TRAV12-2
Genetics Home Reference (NIH)TRAV12-2
Genomic and cartography
GoldenPath hg38 (UCSC)TRAV12-2  -     chr14:21887848-21888500 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAV12-2  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblTRAV12-2 - 14q11.2 [CytoView hg19]  TRAV12-2 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBITRAV12-2 [Mapview hg19]  TRAV12-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB305705 AB306068 AB306105 AB306116
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAV12-2
Cluster EST : UnigeneHs.546374 [ NCBI ]
CGAP (NCI)Hs.546374
Gene ExpressionTRAV12-2 [ NCBI-GEO ]   TRAV12-2 [ EBI - ARRAY_EXPRESS ]   TRAV12-2 [ SEEK ]   TRAV12-2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAV12-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)28673
GTEX Portal (Tissue expression)TRAV12-2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRAV12-2
DMDM Disease mutations28673
Blocks (Seattle)TRAV12-2
Protein Interaction databases
BioGRIDTRAV12-2
STRING (EMBL)TRAV12-2
ZODIACTRAV12-2
Ontologies - Pathways
Huge Navigator TRAV12-2 [HugePedia]
snp3D : Map Gene to Disease28673
BioCentury BCIQTRAV12-2
ClinGenTRAV12-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28673
Chemical/Pharm GKB GenePA36788
Clinical trialTRAV12-2
Miscellaneous
canSAR (ICR)TRAV12-2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAV12-2
EVEXTRAV12-2
GoPubMedTRAV12-2
iHOPTRAV12-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:33:48 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.