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TRBV16 (T-cell receptor beta variable 16 (gene/pseudogene))

Identity

Alias_namesT cell receptor beta variable 16
T cell receptor beta variable 16 (gene/pseudogene)
Alias_symbol (synonym)TCRBV16S1
TCRBV25S1A2PT
Other aliasBV25S1J1.2
TCRB
TCRBV25S1
HGNC (Hugo) TRBV16
LocusID (NCBI) 28571
Atlas_Id 79217
Location 7_KI270803v1_alt  [Link to chromosome band 7]
Location_base_pair Starts at 601732 and ends at 602180 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRBV16   12191
Cards
Entrez_Gene (NCBI)TRBV16  28571  T-cell receptor beta variable 16 (gene/pseudogene)
AliasesBV25S1J1.2; TCRB; TCRBV16S1; TCRBV25S1; 
TCRBV25S1A2PT
GeneCards (Weizmann)TRBV16
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7_KI270803v1_alt:601732-602180 [Contig_View]  TRBV16 [Vega]
TCGA cBioPortalTRBV16
AceView (NCBI)TRBV16
Genatlas (Paris)TRBV16
WikiGenes28571
SOURCE (Princeton)TRBV16
Genetics Home Reference (NIH)TRBV16
Genomic and cartography
GoldenPath hg38 (UCSC)TRBV16  -     chr7_KI270803v1_alt:601732-602180 +  7_KI270803v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRBV16  -     7_KI270803v1_alt   [Description]    (hg19-Feb_2009)
EnsemblTRBV16 - 7_KI270803v1_alt [CytoView hg19]  TRBV16 - 7_KI270803v1_alt [CytoView hg38]
Mapping of homologs : NCBITRBV16 [Mapview hg19]  TRBV16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)L26054
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_001333 NT_187562
Consensus coding sequences : CCDS (NCBI)TRBV16
Gene ExpressionTRBV16 [ NCBI-GEO ]   TRBV16 [ EBI - ARRAY_EXPRESS ]   TRBV16 [ SEEK ]   TRBV16 [ MEM ]
Gene Expression Viewer (FireBrowse)TRBV16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)28571
GTEX Portal (Tissue expression)TRBV16
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRBV16
DMDM Disease mutations28571
Blocks (Seattle)TRBV16
IPIIPI00935470   
Protein Interaction databases
BioGRIDTRBV16
STRING (EMBL)TRBV16
ZODIACTRBV16
Ontologies - Pathways
Huge Navigator TRBV16 [HugePedia]
snp3D : Map Gene to Disease28571
BioCentury BCIQTRBV16
ClinGenTRBV16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28571
Chemical/Pharm GKB GenePA36871
Clinical trialTRBV16
Miscellaneous
canSAR (ICR)TRBV16 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRBV16
EVEXTRBV16
GoPubMedTRBV16
iHOPTRBV16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:26 CEST 2017

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