Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRBV25OR9-2 (T cell receptor beta variable 25/OR9-2 (pseudogene))

Identity

Alias_namesTCRBV11O
T cell receptor beta variable 25/OR9-2
T cell receptor beta variable 25/OR9-2 pseudogene
Alias_symbol (synonym)TRBV25/OR9-2
TCRBV11S2O
TCRBV25S2
Other alias
HGNC (Hugo) TRBV25OR9-2
LocusID (NCBI) 6960
Atlas_Id 76706
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 142379018 and ends at 142494098 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRBV25OR9-2   12206
Cards
Entrez_Gene (NCBI)TRBV25OR9-2  6960  T cell receptor beta variable 25/OR9-2 (pseudogene)
AliasesTCRBV11O; TCRBV11S2O; TCRBV25S2
GeneCards (Weizmann)TRBV25OR9-2
Ensembl hg19 (Hinxton) [Gene_View]  chr7:142379018-142494098 [Contig_View]  TRBV25OR9-2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:142379018-142494098 [Contig_View]  TRBV25OR9-2 [Vega]
TCGA cBioPortalTRBV25OR9-2
AceView (NCBI)TRBV25OR9-2
Genatlas (Paris)TRBV25OR9-2
WikiGenes6960
SOURCE (Princeton)TRBV25OR9-2
Genetics Home Reference (NIH)TRBV25OR9-2
Genomic and cartography
GoldenPath hg19 (UCSC)TRBV25OR9-2  -     chr7:142379018-142494098 +  7q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRBV25OR9-2  -     7q34   [Description]    (hg38-Dec_2013)
EnsemblTRBV25OR9-2 - 7q34 [CytoView hg19]  TRBV25OR9-2 - 7q34 [CytoView hg38]
Mapping of homologs : NCBITRBV25OR9-2 [Mapview hg19]  TRBV25OR9-2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DQ358121
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_001337 NT_008413 NW_004929342
Consensus coding sequences : CCDS (NCBI)TRBV25OR9-2
Cluster EST : UnigeneHs.382212 [ NCBI ]
CGAP (NCI)Hs.382212
Gene ExpressionTRBV25OR9-2 [ NCBI-GEO ]   TRBV25OR9-2 [ EBI - ARRAY_EXPRESS ]   TRBV25OR9-2 [ SEEK ]   TRBV25OR9-2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRBV25OR9-2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6960
GTEX Portal (Tissue expression)TRBV25OR9-2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRBV25OR9-2
DMDM Disease mutations6960
Blocks (Seattle)TRBV25OR9-2
Protein Interaction databases
BioGRIDTRBV25OR9-2
STRING (EMBL)TRBV25OR9-2
ZODIACTRBV25OR9-2
Ontologies - Pathways
Huge Navigator TRBV25OR9-2 [HugePedia]
snp3D : Map Gene to Disease6960
BioCentury BCIQTRBV25OR9-2
ClinGenTRBV25OR9-2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6960
Chemical/Pharm GKB GenePA36886
Clinical trialTRBV25OR9-2
Miscellaneous
canSAR (ICR)TRBV25OR9-2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRBV25OR9-2
EVEXTRBV25OR9-2
GoPubMedTRBV25OR9-2
iHOPTRBV25OR9-2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:35 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.