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TRBV5-4 (T cell receptor beta variable 5-4)

Identity

Alias_symbol (synonym)TRBV54
TCRBV5S4
TCRBV5S6A3N2T
Other alias
HGNC (Hugo) TRBV5-4
LocusID (NCBI) 28611
Atlas_Id 75125
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 142168377 and ends at 142169030 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRBV5-4   12221
Cards
Entrez_Gene (NCBI)TRBV5-4  28611  T cell receptor beta variable 5-4
AliasesTCRBV5S4; TCRBV5S6A3N2T; TRBV54
GeneCards (Weizmann)TRBV5-4
Ensembl hg19 (Hinxton) [Gene_View]  chr7:142168377-142169030 [Contig_View]  TRBV5-4 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:142168377-142169030 [Contig_View]  TRBV5-4 [Vega]
TCGA cBioPortalTRBV5-4
AceView (NCBI)TRBV5-4
Genatlas (Paris)TRBV5-4
WikiGenes28611
SOURCE (Princeton)TRBV5-4
Genetics Home Reference (NIH)TRBV5-4
Genomic and cartography
GoldenPath hg19 (UCSC)TRBV5-4  -     chr7:142168377-142169030 -  7q34   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRBV5-4  -     7q34   [Description]    (hg38-Dec_2013)
EnsemblTRBV5-4 - 7q34 [CytoView hg19]  TRBV5-4 - 7q34 [CytoView hg38]
Mapping of homologs : NCBITRBV5-4 [Mapview hg19]  TRBV5-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC028083
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_001333 NT_007933 NT_187562 NW_004929333
Consensus coding sequences : CCDS (NCBI)TRBV5-4
Cluster EST : UnigeneHs.382212 [ NCBI ]
CGAP (NCI)Hs.382212
Gene ExpressionTRBV5-4 [ NCBI-GEO ]   TRBV5-4 [ EBI - ARRAY_EXPRESS ]   TRBV5-4 [ SEEK ]   TRBV5-4 [ MEM ]
Gene Expression Viewer (FireBrowse)TRBV5-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)28611
GTEX Portal (Tissue expression)TRBV5-4
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRBV5-4
DMDM Disease mutations28611
Blocks (Seattle)TRBV5-4
Protein Interaction databases
BioGRIDTRBV5-4
STRING (EMBL)TRBV5-4
ZODIACTRBV5-4
Ontologies - Pathways
Huge Navigator TRBV5-4 [HugePedia]
snp3D : Map Gene to Disease28611
BioCentury BCIQTRBV5-4
ClinGenTRBV5-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28611
Chemical/Pharm GKB GenePA36901
Clinical trialTRBV5-4
Miscellaneous
canSAR (ICR)TRBV5-4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRBV5-4
EVEXTRBV5-4
GoPubMedTRBV5-4
iHOPTRBV5-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:49:35 CET 2017

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