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TRBV6-5 (T cell receptor beta variable 6-5)

Identity

Alias_symbol (synonym)TRBV65
TCRBV13S1
TCRBV6S5
Other alias
HGNC (Hugo) TRBV6-5
LocusID (NCBI) 28602
Atlas_Id 75126
Location 7_KI270803v1_alt  [Link to chromosome band 7]
Location_base_pair Starts at 434542 and ends at 825709 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRBV6-5   12230
Cards
Entrez_Gene (NCBI)TRBV6-5  28602  T cell receptor beta variable 6-5
AliasesTCRBV13S1; TCRBV6S5; TRBV65
GeneCards (Weizmann)TRBV6-5
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7_KI270803v1_alt:434542-825709 [Contig_View]  TRBV6-5 [Vega]
TCGA cBioPortalTRBV6-5
AceView (NCBI)TRBV6-5
Genatlas (Paris)TRBV6-5
WikiGenes28602
SOURCE (Princeton)TRBV6-5
Genetics Home Reference (NIH)TRBV6-5
Genomic and cartography
GoldenPath hg38 (UCSC)TRBV6-5  -     chr7_KI270803v1_alt:434542-825709 +  7_KI270803v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRBV6-5  -     7_KI270803v1_alt   [Description]    (hg19-Feb_2009)
EnsemblTRBV6-5 - 7_KI270803v1_alt [CytoView hg19]  TRBV6-5 - 7_KI270803v1_alt [CytoView hg38]
Mapping of homologs : NCBITRBV6-5 [Mapview hg19]  TRBV6-5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC110303
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_001333 NT_187562
Consensus coding sequences : CCDS (NCBI)TRBV6-5
Cluster EST : UnigeneHs.382212 [ NCBI ]
CGAP (NCI)Hs.382212
Gene ExpressionTRBV6-5 [ NCBI-GEO ]   TRBV6-5 [ EBI - ARRAY_EXPRESS ]   TRBV6-5 [ SEEK ]   TRBV6-5 [ MEM ]
Gene Expression Viewer (FireBrowse)TRBV6-5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)28602
GTEX Portal (Tissue expression)TRBV6-5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRBV6-5
DMDM Disease mutations28602
Blocks (Seattle)TRBV6-5
IPIIPI00743687   
Protein Interaction databases
BioGRIDTRBV6-5
STRING (EMBL)TRBV6-5
ZODIACTRBV6-5
Ontologies - Pathways
Huge Navigator TRBV6-5 [HugePedia]
snp3D : Map Gene to Disease28602
BioCentury BCIQTRBV6-5
ClinGenTRBV6-5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28602
Chemical/Pharm GKB GenePA36910
Clinical trialTRBV6-5
Miscellaneous
canSAR (ICR)TRBV6-5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRBV6-5
EVEXTRBV6-5
GoPubMedTRBV6-5
iHOPTRBV6-5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:33:51 CET 2017

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