Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRDN-AS1 (TRDN antisense RNA 1)

Identity

Alias_symbol (synonym)HRAT13
Other alias
HGNC (Hugo) TRDN-AS1
LocusID (NCBI) 101927990
Atlas_Id 80117
Location 6q22.31  [Link to chromosome band 6q22]
Location_base_pair Starts at 123439604 and ends at 123471756 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRDN-AS1   40592
Cards
Entrez_Gene (NCBI)TRDN-AS1  101927990  TRDN antisense RNA 1
AliasesHRAT13
GeneCards (Weizmann)TRDN-AS1
Ensembl hg19 (Hinxton)ENSG00000235535 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000235535 [Gene_View]  ENSG00000235535 [Sequence]  chr6:123439604-123471756 [Contig_View]  TRDN-AS1 [Vega]
ICGC DataPortalENSG00000235535
TCGA cBioPortalTRDN-AS1
AceView (NCBI)TRDN-AS1
Genatlas (Paris)TRDN-AS1
WikiGenes101927990
SOURCE (Princeton)TRDN-AS1
Genetics Home Reference (NIH)TRDN-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TRDN-AS1  -     chr6:123439604-123471756 +  6q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRDN-AS1  -     6q22.31   [Description]    (hg19-Feb_2009)
EnsemblTRDN-AS1 - 6q22.31 [CytoView hg19]  TRDN-AS1 - 6q22.31 [CytoView hg38]
Mapping of homologs : NCBITRDN-AS1 [Mapview hg19]  TRDN-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL832096
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRDN-AS1
Cluster EST : UnigeneHs.660877 [ NCBI ]
CGAP (NCI)Hs.660877
Alternative Splicing GalleryENSG00000235535
Gene ExpressionTRDN-AS1 [ NCBI-GEO ]   TRDN-AS1 [ EBI - ARRAY_EXPRESS ]   TRDN-AS1 [ SEEK ]   TRDN-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRDN-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927990
GTEX Portal (Tissue expression)TRDN-AS1
Human Protein AtlasENSG00000235535-TRDN-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRDN-AS1
DMDM Disease mutations101927990
Blocks (Seattle)TRDN-AS1
Human Protein Atlas [tissue]ENSG00000235535-TRDN-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000235535
BioGRIDTRDN-AS1
STRING (EMBL)TRDN-AS1
ZODIACTRDN-AS1
Ontologies - Pathways
Huge Navigator TRDN-AS1 [HugePedia]
snp3D : Map Gene to Disease101927990
BioCentury BCIQTRDN-AS1
ClinGenTRDN-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927990
Clinical trialTRDN-AS1
Miscellaneous
canSAR (ICR)TRDN-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRDN-AS1
EVEXTRDN-AS1
GoPubMedTRDN-AS1
iHOPTRDN-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:36:30 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.