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TRDN (triadin)

Identity

Other aliasCPVT5
TDN
TRISK
HGNC (Hugo) TRDN
LocusID (NCBI) 10345
Atlas_Id 75128
Location 6q22.31  [Link to chromosome band 6q22]
Location_base_pair Starts at 123349475 and ends at 123637093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HDAC2 (6q21) / TRDN (6q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q21;q22) HDAC2/TRDN


External links

Nomenclature
HGNC (Hugo)TRDN   12261
Cards
Entrez_Gene (NCBI)TRDN  10345  triadin
AliasesCPVT5; TDN; TRISK
GeneCards (Weizmann)TRDN
Ensembl hg19 (Hinxton)ENSG00000186439 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186439 [Gene_View]  ENSG00000186439 [Sequence]  chr6:123349475-123637093 [Contig_View]  TRDN [Vega]
ICGC DataPortalENSG00000186439
TCGA cBioPortalTRDN
AceView (NCBI)TRDN
Genatlas (Paris)TRDN
WikiGenes10345
SOURCE (Princeton)TRDN
Genetics Home Reference (NIH)TRDN
Genomic and cartography
GoldenPath hg38 (UCSC)TRDN  -     chr6:123349475-123637093 -  6q22.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRDN  -     6q22.31   [Description]    (hg19-Feb_2009)
EnsemblTRDN - 6q22.31 [CytoView hg19]  TRDN - 6q22.31 [CytoView hg38]
Mapping of homologs : NCBITRDN [Mapview hg19]  TRDN [Mapview hg38]
OMIM603283   604772   615441   
Gene and transcription
Genbank (Entrez)AA401295 AI371054 AI375093 AJ489257 AK291867
RefSeq transcript (Entrez)NM_001251987 NM_001256020 NM_001256021 NM_001256022 NM_006073
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRDN
Cluster EST : UnigeneHs.144744 [ NCBI ]
CGAP (NCI)Hs.144744
Alternative Splicing GalleryENSG00000186439
Gene ExpressionTRDN [ NCBI-GEO ]   TRDN [ EBI - ARRAY_EXPRESS ]   TRDN [ SEEK ]   TRDN [ MEM ]
Gene Expression Viewer (FireBrowse)TRDN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10345
GTEX Portal (Tissue expression)TRDN
Human Protein AtlasENSG00000186439-TRDN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13061   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13061  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13061
Splice isoforms : SwissVarQ13061
PhosPhoSitePlusQ13061
Domains : Interpro (EBI)Asp-B-hydro/Triadin_dom    Triadin   
Domain families : Pfam (Sanger)Asp-B-Hydro_N (PF05279)   
Domain families : Pfam (NCBI)pfam05279   
Conserved Domain (NCBI)TRDN
DMDM Disease mutations10345
Blocks (Seattle)TRDN
SuperfamilyQ13061
Human Protein Atlas [tissue]ENSG00000186439-TRDN [tissue]
Peptide AtlasQ13061
HPRD04474
IPIIPI00220272   IPI01013729   IPI00478400   IPI00552882   IPI01010801   IPI00873296   IPI00873771   IPI01010388   
Protein Interaction databases
DIP (DOE-UCLA)Q13061
IntAct (EBI)Q13061
FunCoupENSG00000186439
BioGRIDTRDN
STRING (EMBL)TRDN
ZODIACTRDN
Ontologies - Pathways
QuickGOQ13061
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
NDEx NetworkTRDN
Atlas of Cancer Signalling NetworkTRDN
Wikipedia pathwaysTRDN
Orthology - Evolution
OrthoDB10345
GeneTree (enSembl)ENSG00000186439
Phylogenetic Trees/Animal Genes : TreeFamTRDN
HOVERGENQ13061
HOGENOMQ13061
Homologs : HomoloGeneTRDN
Homology/Alignments : Family Browser (UCSC)TRDN
Gene fusions - Rearrangements
Fusion : QuiverTRDN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRDN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRDN
dbVarTRDN
ClinVarTRDN
1000_GenomesTRDN 
Exome Variant ServerTRDN
ExAC (Exome Aggregation Consortium)ENSG00000186439
GNOMAD BrowserENSG00000186439
Varsome BrowserTRDN
Genetic variants : HAPMAP10345
Genomic Variants (DGV)TRDN [DGVbeta]
DECIPHERTRDN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRDN 
Mutations
ICGC Data PortalTRDN 
TCGA Data PortalTRDN 
Broad Tumor PortalTRDN
OASIS PortalTRDN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRDN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRDN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)Leiden Muscular Dystrophy pages
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRDN
DgiDB (Drug Gene Interaction Database)TRDN
DoCM (Curated mutations)TRDN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRDN (select a term)
intoGenTRDN
Cancer3DTRDN(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603283    604772    615441   
Orphanet3525   
DisGeNETTRDN
MedgenTRDN
Genetic Testing Registry TRDN
NextProtQ13061 [Medical]
TSGene10345
GENETestsTRDN
Target ValidationTRDN
Huge Navigator TRDN [HugePedia]
snp3D : Map Gene to Disease10345
BioCentury BCIQTRDN
ClinGenTRDN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10345
Chemical/Pharm GKB GenePA36941
Clinical trialTRDN
Miscellaneous
canSAR (ICR)TRDN (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRDN
EVEXTRDN
GoPubMedTRDN
iHOPTRDN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 14:36:30 CEST 2018

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