Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TRERNA1 (translation regulatory long non-coding RNA 1)

Identity

Alias (NCBI)LINC00651
treRNA
HGNC (Hugo) TRERNA1
HGNC Alias symbncRNA-a7
treRNA
HGNC Alias nametranslational regulatory long non-coding RNA
HGNC Previous nameLINC00651
HGNC Previous namelong intergenic non-protein coding RNA 651
LocusID (NCBI) 100887755
Atlas_Id 75137
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 50040707 and ends at 50041629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRERNA1   44307
Cards
Entrez_Gene (NCBI)TRERNA1  100887755  translation regulatory long non-coding RNA 1
AliasesLINC00651; treRNA
GeneCards (Weizmann)TRERNA1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr20:50040707-50041629 [Contig_View]  TRERNA1 [Vega]
TCGA cBioPortalTRERNA1
AceView (NCBI)TRERNA1
Genatlas (Paris)TRERNA1
WikiGenes100887755
SOURCE (Princeton)TRERNA1
Genetics Home Reference (NIH)TRERNA1
Genomic and cartography
GoldenPath hg38 (UCSC)TRERNA1  -     chr20:50040707-50041629 -  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRERNA1  -     20q13.13   [Description]    (hg19-Feb_2009)
GoldenPathTRERNA1 - 20q13.13 [CytoView hg19]  TRERNA1 - 20q13.13 [CytoView hg38]
genome Data Viewer NCBITRERNA1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI654216 AI968488 BX118093 HG975414
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRERNA1
Gene ExpressionTRERNA1 [ NCBI-GEO ]   TRERNA1 [ EBI - ARRAY_EXPRESS ]   TRERNA1 [ SEEK ]   TRERNA1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRERNA1 [ Firebrowse - Broad ]
GenevisibleExpression of TRERNA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100887755
GTEX Portal (Tissue expression)TRERNA1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRERNA1
DMDM Disease mutations100887755
Blocks (Seattle)TRERNA1
Protein Interaction databases
BioGRIDTRERNA1
STRING (EMBL)TRERNA1
ZODIACTRERNA1
Ontologies - Pathways
Huge Navigator TRERNA1 [HugePedia]
snp3D : Map Gene to Disease100887755
BioCentury BCIQTRERNA1
ClinGenTRERNA1
Clinical trials, drugs, therapy
Protein Interactions : CTD100887755
Clinical trialTRERNA1
Miscellaneous
canSAR (ICR)TRERNA1 (select the gene name)
HarmonizomeTRERNA1
DataMed IndexTRERNA1
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRERNA1
EVEXTRERNA1
GoPubMedTRERNA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 16:33:55 CEST 2020

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