Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRERNA1 (translation regulatory long non-coding RNA 1)

Identity

Alias_namesLINC00651
long intergenic non-protein coding RNA 651
Alias_symbol (synonym)ncRNA-a7
treRNA
Other alias
HGNC (Hugo) TRERNA1
LocusID (NCBI) 100887755
Atlas_Id 75137
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 48657244 and ends at 48658166 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRERNA1   44307
Cards
Entrez_Gene (NCBI)TRERNA1  100887755  translation regulatory long non-coding RNA 1
AliasesLINC00651; treRNA
GeneCards (Weizmann)TRERNA1
Ensembl hg19 (Hinxton) [Gene_View]  chr20:48657244-48658166 [Contig_View]  TRERNA1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:48657244-48658166 [Contig_View]  TRERNA1 [Vega]
TCGA cBioPortalTRERNA1
AceView (NCBI)TRERNA1
Genatlas (Paris)TRERNA1
WikiGenes100887755
SOURCE (Princeton)TRERNA1
Genetics Home Reference (NIH)TRERNA1
Genomic and cartography
GoldenPath hg19 (UCSC)TRERNA1  -     chr20:48657244-48658166 -  20q13.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRERNA1  -     20q13.13   [Description]    (hg38-Dec_2013)
EnsemblTRERNA1 - 20q13.13 [CytoView hg19]  TRERNA1 - 20q13.13 [CytoView hg38]
Mapping of homologs : NCBITRERNA1 [Mapview hg19]  TRERNA1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI654216 AI968488 BX118093 HG511420 HG975414
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)TRERNA1
Cluster EST : UnigeneHs.195705 [ NCBI ]
CGAP (NCI)Hs.195705
Gene ExpressionTRERNA1 [ NCBI-GEO ]   TRERNA1 [ EBI - ARRAY_EXPRESS ]   TRERNA1 [ SEEK ]   TRERNA1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRERNA1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100887755
GTEX Portal (Tissue expression)TRERNA1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRERNA1
DMDM Disease mutations100887755
Blocks (Seattle)TRERNA1
Protein Interaction databases
BioGRIDTRERNA1
STRING (EMBL)TRERNA1
ZODIACTRERNA1
Ontologies - Pathways
Huge Navigator TRERNA1 [HugePedia]
snp3D : Map Gene to Disease100887755
BioCentury BCIQTRERNA1
ClinGenTRERNA1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100887755
Clinical trialTRERNA1
Miscellaneous
canSAR (ICR)TRERNA1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRERNA1
EVEXTRERNA1
GoPubMedTRERNA1
iHOPTRERNA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:49:38 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.