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TRERNA1 (translation regulatory long non-coding RNA 1)

Identity

Alias (NCBI)LINC00651
treRNA
HGNC (Hugo) TRERNA1
HGNC Alias symbncRNA-a7
treRNA
HGNC Alias nametranslational regulatory long non-coding RNA
HGNC Previous nameLINC00651
HGNC Previous namelong intergenic non-protein coding RNA 651
LocusID (NCBI) 100887755
Atlas_Id 58065
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 50040707 and ends at 50041629 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)TRERNA1   44307
Cards
Entrez_Gene (NCBI)TRERNA1    translation regulatory long non-coding RNA 1
AliasesLINC00651; treRNA
GeneCards (Weizmann)TRERNA1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr20:50040707-50041629 [Contig_View]  TRERNA1 [Vega]
TCGA cBioPortalTRERNA1
AceView (NCBI)TRERNA1
Genatlas (Paris)TRERNA1
SOURCE (Princeton)TRERNA1
Genetics Home Reference (NIH)TRERNA1
Genomic and cartography
GoldenPath hg38 (UCSC)TRERNA1  -     chr20:50040707-50041629 -  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRERNA1  -     20q13.13   [Description]    (hg19-Feb_2009)
GoldenPathTRERNA1 - 20q13.13 [CytoView hg19]  TRERNA1 - 20q13.13 [CytoView hg38]
Genome Data Viewer NCBITRERNA1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI654216 AI968488 BX118093 HG975414
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TRERNA1
Gene ExpressionTRERNA1 [ NCBI-GEO ]   TRERNA1 [ EBI - ARRAY_EXPRESS ]   TRERNA1 [ SEEK ]   TRERNA1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRERNA1 [ Firebrowse - Broad ]
GenevisibleExpression of TRERNA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100887755
GTEX Portal (Tissue expression)TRERNA1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRERNA1
Protein Interaction databases
BioGRIDTRERNA1
STRING (EMBL)TRERNA1
ZODIACTRERNA1
Ontologies - Pathways
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRERNA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:15 CEST 2021

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