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TRGC2 (T cell receptor gamma constant 2)

Identity

Alias_namesTCRGC2
Alias_symbol (synonym)TRGC2(2X)
TRGC2(3X)
Other alias
HGNC (Hugo) TRGC2
LocusID (NCBI) 6967
Atlas_Id 75139
Location 7p14.1  [Link to chromosome band 7p14]
Location_base_pair Starts at 38239584 and ends at 38259307 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LOC100506776 () / TRGC2 (7p14.1)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRGC2   12276
Cards
Entrez_Gene (NCBI)TRGC2  6967  T cell receptor gamma constant 2
AliasesTCRGC2; TRGC2(2X); TRGC2(3X)
GeneCards (Weizmann)TRGC2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:38239584-38259307 [Contig_View]  TRGC2 [Vega]
TCGA cBioPortalTRGC2
AceView (NCBI)TRGC2
Genatlas (Paris)TRGC2
WikiGenes6967
SOURCE (Princeton)TRGC2
Genetics Home Reference (NIH)TRGC2
Genomic and cartography
GoldenPath hg38 (UCSC)TRGC2  -     chr7:38239584-38259307 -  7p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRGC2  -     7p14.1   [Description]    (hg19-Feb_2009)
EnsemblTRGC2 - 7p14.1 [CytoView hg19]  TRGC2 - 7p14.1 [CytoView hg38]
Mapping of homologs : NCBITRGC2 [Mapview hg19]  TRGC2 [Mapview hg38]
OMIM615450   
Gene and transcription
Genbank (Entrez)BC039116 M13231 M17323
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRGC2
Cluster EST : UnigeneHs.731375 [ NCBI ]
CGAP (NCI)Hs.731375
Gene ExpressionTRGC2 [ NCBI-GEO ]   TRGC2 [ EBI - ARRAY_EXPRESS ]   TRGC2 [ SEEK ]   TRGC2 [ MEM ]
Gene Expression Viewer (FireBrowse)TRGC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6967
GTEX Portal (Tissue expression)TRGC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP03986   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP03986  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP03986
Splice isoforms : SwissVarP03986
PhosPhoSitePlusP03986
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_C1-set   
Domain families : Pfam (Sanger)C1-set (PF07654)   
Domain families : Pfam (NCBI)pfam07654   
Domain families : Smart (EMBL)IGc1 (SM00407)  
Conserved Domain (NCBI)TRGC2
DMDM Disease mutations6967
Blocks (Seattle)TRGC2
PDB (SRS)1HXM   
PDB (PDBSum)1HXM   
PDB (IMB)1HXM   
PDB (RSDB)1HXM   
Structural Biology KnowledgeBase1HXM   
SCOP (Structural Classification of Proteins)1HXM   
CATH (Classification of proteins str}cturas 1HXM   
SuperfamilyP03986
Peptide AtlasP03986
IPIIPI00639851   IPI00922278   
Protein Interaction databases
DIP (DOE-UCLA)P03986
IntAct (EBI)P03986
BioGRIDTRGC2
STRING (EMBL)TRGC2
ZODIACTRGC2
Ontologies - Pathways
QuickGOP03986
Ontology : AmiGOtransmembrane signaling receptor activity  integral component of plasma membrane  immune response  signal transduction  
Ontology : EGO-EBItransmembrane signaling receptor activity  integral component of plasma membrane  immune response  signal transduction  
NDEx NetworkTRGC2
Atlas of Cancer Signalling NetworkTRGC2
Wikipedia pathwaysTRGC2
Orthology - Evolution
OrthoDB6967
Phylogenetic Trees/Animal Genes : TreeFamTRGC2
HOVERGENP03986
HOGENOMP03986
Homologs : HomoloGeneTRGC2
Homology/Alignments : Family Browser (UCSC)TRGC2
Gene fusions - Rearrangements
Fusion: Tumor Portal TRGC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRGC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRGC2
dbVarTRGC2
ClinVarTRGC2
1000_GenomesTRGC2 
Exome Variant ServerTRGC2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP6967
Genomic Variants (DGV)TRGC2 [DGVbeta]
DECIPHERTRGC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRGC2 
Mutations
ICGC Data PortalTRGC2 
TCGA Data PortalTRGC2 
Broad Tumor PortalTRGC2
OASIS PortalTRGC2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRGC2
BioMutasearch TRGC2
DgiDB (Drug Gene Interaction Database)TRGC2
DoCM (Curated mutations)TRGC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRGC2 (select a term)
intoGenTRGC2
Cancer3DTRGC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615450   
Orphanet
MedgenTRGC2
Genetic Testing Registry TRGC2
NextProtP03986 [Medical]
TSGene6967
GENETestsTRGC2
Target ValidationTRGC2
Huge Navigator TRGC2 [HugePedia]
snp3D : Map Gene to Disease6967
BioCentury BCIQTRGC2
ClinGenTRGC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6967
Chemical/Pharm GKB GenePA36956
Clinical trialTRGC2
Miscellaneous
canSAR (ICR)TRGC2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRGC2
EVEXTRGC2
GoPubMedTRGC2
iHOPTRGC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:33:54 CET 2017

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