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TRGV3 (T cell receptor gamma variable 3)

Identity

Alias_namesTCRGV3
Alias_symbol (synonym)V1S3
Other alias
HGNC (Hugo) TRGV3
LocusID (NCBI) 6976
Atlas_Id 75140
Location 7p14.1  [Link to chromosome band 7p14]
Location_base_pair Starts at 38396908 and ends at 38398763 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRGV3   12288
Cards
Entrez_Gene (NCBI)TRGV3  6976  T cell receptor gamma variable 3
AliasesTCRGV3; V1S3
GeneCards (Weizmann)TRGV3
Ensembl hg19 (Hinxton) [Gene_View]  chr7:38396908-38398763 [Contig_View]  TRGV3 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr7:38396908-38398763 [Contig_View]  TRGV3 [Vega]
TCGA cBioPortalTRGV3
AceView (NCBI)TRGV3
Genatlas (Paris)TRGV3
WikiGenes6976
SOURCE (Princeton)TRGV3
Genetics Home Reference (NIH)TRGV3
Genomic and cartography
GoldenPath hg19 (UCSC)TRGV3  -     chr7:38396908-38398763 -  7p14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRGV3  -     7p14.1   [Description]    (hg38-Dec_2013)
EnsemblTRGV3 - 7p14.1 [CytoView hg19]  TRGV3 - 7p14.1 [CytoView hg38]
Mapping of homologs : NCBITRGV3 [Mapview hg19]  TRGV3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC071739
RefSeq transcript (Entrez)NM_001013738
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_001336 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)TRGV3
Cluster EST : UnigeneHs.731375 [ NCBI ]
CGAP (NCI)Hs.731375
Gene ExpressionTRGV3 [ NCBI-GEO ]   TRGV3 [ EBI - ARRAY_EXPRESS ]   TRGV3 [ SEEK ]   TRGV3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRGV3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6976
GTEX Portal (Tissue expression)TRGV3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP03979   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP03979  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP03979
Splice isoforms : SwissVarP03979
PhosPhoSitePlusP03979
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig_sub    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)TRGV3
DMDM Disease mutations6976
Blocks (Seattle)TRGV3
SuperfamilyP03979
Peptide AtlasP03979
IPIIPI00927747   
Protein Interaction databases
DIP (DOE-UCLA)P03979
IntAct (EBI)P03979
BioGRIDTRGV3
STRING (EMBL)TRGV3
ZODIACTRGV3
Ontologies - Pathways
QuickGOP03979
Ontology : AmiGOplasma membrane  immune response  MHC protein binding  peptide antigen binding  
Ontology : EGO-EBIplasma membrane  immune response  MHC protein binding  peptide antigen binding  
NDEx NetworkTRGV3
Atlas of Cancer Signalling NetworkTRGV3
Wikipedia pathwaysTRGV3
Orthology - Evolution
OrthoDB6976
Phylogenetic Trees/Animal Genes : TreeFamTRGV3
HOVERGENP03979
HOGENOMP03979
Homologs : HomoloGeneTRGV3
Homology/Alignments : Family Browser (UCSC)TRGV3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRGV3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRGV3
dbVarTRGV3
ClinVarTRGV3
1000_GenomesTRGV3 
Exome Variant ServerTRGV3
ExAC (Exome Aggregation Consortium)TRGV3 (select the gene name)
Genetic variants : HAPMAP6976
Genomic Variants (DGV)TRGV3 [DGVbeta]
DECIPHER (Syndromes)7:38396908-38398763  
CONAN: Copy Number AnalysisTRGV3 
Mutations
ICGC Data PortalTRGV3 
TCGA Data PortalTRGV3 
Broad Tumor PortalTRGV3
OASIS PortalTRGV3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRGV3
BioMutasearch TRGV3
DgiDB (Drug Gene Interaction Database)TRGV3
DoCM (Curated mutations)TRGV3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRGV3 (select a term)
intoGenTRGV3
Cancer3DTRGV3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRGV3
Genetic Testing Registry TRGV3
NextProtP03979 [Medical]
TSGene6976
GENETestsTRGV3
Huge Navigator TRGV3 [HugePedia]
snp3D : Map Gene to Disease6976
BioCentury BCIQTRGV3
ClinGenTRGV3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6976
Chemical/Pharm GKB GenePA36968
Clinical trialTRGV3
Miscellaneous
canSAR (ICR)TRGV3 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRGV3
EVEXTRGV3
GoPubMedTRGV3
iHOPTRGV3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:49:38 CET 2017

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