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TRGV3 (T cell receptor gamma variable 3)

Identity

Alias (NCBI)TCRGV3
V1S3
HGNC (Hugo) TRGV3
HGNC Alias symbV1S3
HGNC Alias nameT-cell receptor, gamma, variable region V3
HGNC Previous nameTCRGV3
LocusID (NCBI) 6976
Atlas_Id 75140
Location 7p14.1  [Link to chromosome band 7p14]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TRGV3   12288
Cards
Entrez_Gene (NCBI)TRGV3    T cell receptor gamma variable 3
AliasesTCRGV3; V1S3
GeneCards (Weizmann)TRGV3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  TRGV3 [Vega]
TCGA cBioPortalTRGV3
AceView (NCBI)TRGV3
Genatlas (Paris)TRGV3
SOURCE (Princeton)TRGV3
Genetics Home Reference (NIH)TRGV3
Genomic and cartography
GoldenPath hg38 (UCSC)TRGV3  -  
GoldenPath hg19 (UCSC)TRGV3  -  
GoldenPathTRGV3 - [CytoView hg19]  TRGV3 - [CytoView hg38]
Genome Data Viewer NCBITRGV3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC071739
RefSeq transcript (Entrez)NM_001013738
Consensus coding sequences : CCDS (NCBI)TRGV3
Gene ExpressionTRGV3 [ NCBI-GEO ]   TRGV3 [ EBI - ARRAY_EXPRESS ]   TRGV3 [ SEEK ]   TRGV3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRGV3 [ Firebrowse - Broad ]
GenevisibleExpression of TRGV3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6976
GTEX Portal (Tissue expression)TRGV3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP03979   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP03979  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP03979
PhosPhoSitePlusP03979
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Conserved Domain (NCBI)TRGV3
SuperfamilyP03979
AlphaFold pdb e-kbP03979   
Protein Interaction databases
DIP (DOE-UCLA)P03979
IntAct (EBI)P03979
BioGRIDTRGV3
STRING (EMBL)TRGV3
ZODIACTRGV3
Ontologies - Pathways
QuickGOP03979
Ontology : AmiGOadaptive immune response  plasma membrane  immune response  external side of plasma membrane  T cell receptor complex  MHC protein binding  peptide antigen binding  innate immune response  
Ontology : EGO-EBIadaptive immune response  plasma membrane  immune response  external side of plasma membrane  T cell receptor complex  MHC protein binding  peptide antigen binding  innate immune response  
NDEx NetworkTRGV3
Atlas of Cancer Signalling NetworkTRGV3
Wikipedia pathwaysTRGV3
Orthology - Evolution
OrthoDB6976
Phylogenetic Trees/Animal Genes : TreeFamTRGV3
Homologs : HomoloGeneTRGV3
Homology/Alignments : Family Browser (UCSC)TRGV3
Gene fusions - Rearrangements
Fusion : QuiverTRGV3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRGV3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRGV3
dbVarTRGV3
ClinVarTRGV3
MonarchTRGV3
1000_GenomesTRGV3 
Exome Variant ServerTRGV3
Varsome BrowserTRGV3
ACMGTRGV3 variants
VarityP03979
Genomic Variants (DGV)TRGV3 [DGVbeta]
DECIPHERTRGV3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRGV3 
Mutations
ICGC Data PortalTRGV3 
TCGA Data PortalTRGV3 
Broad Tumor PortalTRGV3
OASIS PortalTRGV3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRGV3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRGV3
DgiDB (Drug Gene Interaction Database)TRGV3
DoCM (Curated mutations)TRGV3
CIViC (Clinical Interpretations of Variants in Cancer)TRGV3
Cancer3DTRGV3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRGV3
MedgenTRGV3
Genetic Testing Registry TRGV3
NextProtP03979 [Medical]
GENETestsTRGV3
Target ValidationTRGV3
Huge Navigator TRGV3 [HugePedia]
ClinGenTRGV3
Clinical trials, drugs, therapy
MyCancerGenomeTRGV3
Protein Interactions : CTDTRGV3
Pharm GKB GenePA36968
PharosP03979
Clinical trialTRGV3
Miscellaneous
canSAR (ICR)TRGV3
HarmonizomeTRGV3
DataMed IndexTRGV3
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRGV3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 16:26:51 CEST 2021

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