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TRGV9 (T cell receptor gamma variable 9)

Identity

Alias (NCBI)TCRGV9
TRGC1
V2
HGNC (Hugo) TRGV9
HGNC Alias symbV2
HGNC Alias nameT-cell receptor, gamma, variable region V9
HGNC Previous nameTCRGV9
HGNC Previous nameTCRGV9
LocusID (NCBI) 6983
Atlas_Id 45924
Location 7p14.1  [Link to chromosome band 7p14]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

 

Nomenclature
HGNC (Hugo)TRGV9   12295
Cards
Entrez_Gene (NCBI)TRGV9    T cell receptor gamma variable 9
AliasesTCRGV9; TRGC1; V2
GeneCards (Weizmann)TRGV9
Ensembl hg19 (Hinxton)ENSG00000211695 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000211695 [Gene_View]  ENSG00000211695 [Sequence]  - [Contig_View]  TRGV9 [Vega]
ICGC DataPortalENSG00000211695
TCGA cBioPortalTRGV9
AceView (NCBI)TRGV9
Genatlas (Paris)TRGV9
SOURCE (Princeton)TRGV9
Genetics Home Reference (NIH)TRGV9
Genomic and cartography
GoldenPath hg38 (UCSC)TRGV9  -  
GoldenPath hg19 (UCSC)TRGV9  -  
GoldenPathTRGV9 - [CytoView hg19]  TRGV9 - [CytoView hg38]
ImmunoBaseENSG00000211695
Genome Data Viewer NCBITRGV9 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC062761 BC072387 BC072396 M16768
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)TRGV9
Gene ExpressionTRGV9 [ NCBI-GEO ]   TRGV9 [ EBI - ARRAY_EXPRESS ]   TRGV9 [ SEEK ]   TRGV9 [ MEM ]
Gene Expression Viewer (FireBrowse)TRGV9 [ Firebrowse - Broad ]
GenevisibleExpression of TRGV9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6983
GTEX Portal (Tissue expression)TRGV9
Human Protein AtlasENSG00000211695-TRGV9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99603   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99603  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99603
PhosPhoSitePlusQ99603
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)TRGV9
SuperfamilyQ99603
AlphaFold pdb e-kbQ99603   
Human Protein Atlas [tissue]ENSG00000211695-TRGV9 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q99603
IntAct (EBI)Q99603
BioGRIDTRGV9
STRING (EMBL)TRGV9
ZODIACTRGV9
Ontologies - Pathways
QuickGOQ99603
Ontology : AmiGOadaptive immune response  integral component of plasma membrane  external side of plasma membrane  T cell receptor complex  MHC protein binding  peptide antigen binding  innate immune response  
Ontology : EGO-EBIadaptive immune response  integral component of plasma membrane  external side of plasma membrane  T cell receptor complex  MHC protein binding  peptide antigen binding  innate immune response  
NDEx NetworkTRGV9
Atlas of Cancer Signalling NetworkTRGV9
Wikipedia pathwaysTRGV9
Orthology - Evolution
OrthoDB6983
GeneTree (enSembl)ENSG00000211695
Phylogenetic Trees/Animal Genes : TreeFamTRGV9
Homologs : HomoloGeneTRGV9
Homology/Alignments : Family Browser (UCSC)TRGV9
Gene fusions - Rearrangements
Fusion : QuiverTRGV9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRGV9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRGV9
dbVarTRGV9
ClinVarTRGV9
MonarchTRGV9
1000_GenomesTRGV9 
Exome Variant ServerTRGV9
GNOMAD BrowserENSG00000211695
Varsome BrowserTRGV9
ACMGTRGV9 variants
VarityQ99603
Genomic Variants (DGV)TRGV9 [DGVbeta]
DECIPHERTRGV9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRGV9 
Mutations
ICGC Data PortalTRGV9 
TCGA Data PortalTRGV9 
Broad Tumor PortalTRGV9
OASIS PortalTRGV9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRGV9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRGV9
DgiDB (Drug Gene Interaction Database)TRGV9
DoCM (Curated mutations)TRGV9
CIViC (Clinical Interpretations of Variants in Cancer)TRGV9
Cancer3DTRGV9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRGV9
MedgenTRGV9
Genetic Testing Registry TRGV9
NextProtQ99603 [Medical]
GENETestsTRGV9
Target ValidationTRGV9
Huge Navigator TRGV9 [HugePedia]
ClinGenTRGV9
Clinical trials, drugs, therapy
MyCancerGenomeTRGV9
Protein Interactions : CTDTRGV9
Pharm GKB GenePA36975
PharosQ99603
Clinical trialTRGV9
Miscellaneous
canSAR (ICR)TRGV9
HarmonizomeTRGV9
DataMed IndexTRGV9
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRGV9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:36:16 CEST 2021

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