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TRHR (thyrotropin releasing hormone receptor)

Identity

Alias_namesthyrotropin-releasing hormone receptor
Other aliasTRH-R
HGNC (Hugo) TRHR
LocusID (NCBI) 7201
Atlas_Id 53994
Location 8q23.1  [Link to chromosome band 8q23]
Location_base_pair Starts at 110099653 and ends at 110131812 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MTDH (8q22.1) / TRHR (8q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRHR   12299
Cards
Entrez_Gene (NCBI)TRHR  7201  thyrotropin releasing hormone receptor
AliasesTRH-R
GeneCards (Weizmann)TRHR
Ensembl hg19 (Hinxton)ENSG00000174417 [Gene_View]  chr8:110099653-110131812 [Contig_View]  TRHR [Vega]
Ensembl hg38 (Hinxton)ENSG00000174417 [Gene_View]  chr8:110099653-110131812 [Contig_View]  TRHR [Vega]
ICGC DataPortalENSG00000174417
TCGA cBioPortalTRHR
AceView (NCBI)TRHR
Genatlas (Paris)TRHR
WikiGenes7201
SOURCE (Princeton)TRHR
Genetics Home Reference (NIH)TRHR
Genomic and cartography
GoldenPath hg19 (UCSC)TRHR  -     chr8:110099653-110131812 +  8q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRHR  -     8q23.1   [Description]    (hg38-Dec_2013)
EnsemblTRHR - 8q23.1 [CytoView hg19]  TRHR - 8q23.1 [CytoView hg38]
Mapping of homologs : NCBITRHR [Mapview hg19]  TRHR [Mapview hg38]
OMIM188545   
Gene and transcription
Genbank (Entrez)AY493373 BC105045 BC113360 D16845 HQ258206
RefSeq transcript (Entrez)NM_003301
RefSeq genomic (Entrez)NC_000008 NC_018919 NG_017161 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)TRHR
Cluster EST : UnigeneHs.3022 [ NCBI ]
CGAP (NCI)Hs.3022
Alternative Splicing GalleryENSG00000174417
Gene ExpressionTRHR [ NCBI-GEO ]   TRHR [ EBI - ARRAY_EXPRESS ]   TRHR [ SEEK ]   TRHR [ MEM ]
Gene Expression Viewer (FireBrowse)TRHR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7201
GTEX Portal (Tissue expression)TRHR
Protein : pattern, domain, 3D structure
UniProt/SwissProtP34981   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP34981  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP34981
Splice isoforms : SwissVarP34981
PhosPhoSitePlusP34981
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn    GPCR_Rhodpsn_7TM    TRH_rcpt_1   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)TRHR
DMDM Disease mutations7201
Blocks (Seattle)TRHR
SuperfamilyP34981
Human Protein AtlasENSG00000174417
Peptide AtlasP34981
HPRD11767
IPIIPI00003065   
Protein Interaction databases
DIP (DOE-UCLA)P34981
IntAct (EBI)P34981
FunCoupENSG00000174417
BioGRIDTRHR
STRING (EMBL)TRHR
ZODIACTRHR
Ontologies - Pathways
QuickGOP34981
Ontology : AmiGOthyrotropin-releasing hormone receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  
Ontology : EGO-EBIthyrotropin-releasing hormone receptor activity  plasma membrane  integral component of plasma membrane  G-protein coupled receptor signaling pathway  
Pathways : KEGGCalcium signaling pathway    Neuroactive ligand-receptor interaction   
NDEx NetworkTRHR
Atlas of Cancer Signalling NetworkTRHR
Wikipedia pathwaysTRHR
Orthology - Evolution
OrthoDB7201
GeneTree (enSembl)ENSG00000174417
Phylogenetic Trees/Animal Genes : TreeFamTRHR
HOVERGENP34981
HOGENOMP34981
Homologs : HomoloGeneTRHR
Homology/Alignments : Family Browser (UCSC)TRHR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRHR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRHR
dbVarTRHR
ClinVarTRHR
1000_GenomesTRHR 
Exome Variant ServerTRHR
ExAC (Exome Aggregation Consortium)TRHR (select the gene name)
Genetic variants : HAPMAP7201
Genomic Variants (DGV)TRHR [DGVbeta]
DECIPHER (Syndromes)8:110099653-110131812  ENSG00000174417
CONAN: Copy Number AnalysisTRHR 
Mutations
ICGC Data PortalTRHR 
TCGA Data PortalTRHR 
Broad Tumor PortalTRHR
OASIS PortalTRHR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRHR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRHR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRHR
DgiDB (Drug Gene Interaction Database)TRHR
DoCM (Curated mutations)TRHR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRHR (select a term)
intoGenTRHR
Cancer3DTRHR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM188545   
Orphanet14405   
MedgenTRHR
Genetic Testing Registry TRHR
NextProtP34981 [Medical]
TSGene7201
GENETestsTRHR
Huge Navigator TRHR [HugePedia]
snp3D : Map Gene to Disease7201
BioCentury BCIQTRHR
ClinGenTRHR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7201
Chemical/Pharm GKB GenePA36979
Clinical trialTRHR
Miscellaneous
canSAR (ICR)TRHR (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRHR
EVEXTRHR
GoPubMedTRHR
iHOPTRHR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:24 CEST 2017

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