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TRIB3 (tribbles pseudokinase 3)

Identity

Alias_namesC20orf97
chromosome 20 open reading frame 97
tribbles homolog 3 (Drosophila)
Alias_symbol (synonym)dJ1103G7.3
TRB3
Other aliasNIPK
SINK
SKIP3
HGNC (Hugo) TRIB3
LocusID (NCBI) 57761
Atlas_Id 43541
Location 20p13  [Link to chromosome band 20p13]
Location_base_pair Starts at 380629 and ends at 397559 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BMP2 (20p12.3) / TRIB3 (20p13)TRIB3 (20p13) / DEFB125 (20p13)TRIB3 (20p13) / NADK2 (5p13.2)
TRIB3 (20p13) / WASF2 (1p36.11)BMP2 20p12.3 / TRIB3 20p13TRIB3 20p13 / DEFB125 20p13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t2020p12p13ID104584


External links

Nomenclature
HGNC (Hugo)TRIB3   16228
Cards
Entrez_Gene (NCBI)TRIB3  57761  tribbles pseudokinase 3
AliasesC20orf97; NIPK; SINK; SKIP3; 
TRB3
GeneCards (Weizmann)TRIB3
Ensembl hg19 (Hinxton)ENSG00000101255 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101255 [Gene_View]  ENSG00000101255 [Sequence]  chr20:380629-397559 [Contig_View]  TRIB3 [Vega]
ICGC DataPortalENSG00000101255
TCGA cBioPortalTRIB3
AceView (NCBI)TRIB3
Genatlas (Paris)TRIB3
WikiGenes57761
SOURCE (Princeton)TRIB3
Genetics Home Reference (NIH)TRIB3
Genomic and cartography
GoldenPath hg38 (UCSC)TRIB3  -     chr20:380629-397559 +  20p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIB3  -     20p13   [Description]    (hg19-Feb_2009)
GoldenPathTRIB3 - 20p13 [CytoView hg19]  TRIB3 - 20p13 [CytoView hg38]
ImmunoBaseENSG00000101255
Mapping of homologs : NCBITRIB3 [Mapview hg19]  TRIB3 [Mapview hg38]
OMIM607898   
Gene and transcription
Genbank (Entrez)AF250311 AJ697936 AJ697937 AJ697938 AJ697939
RefSeq transcript (Entrez)NM_001301188 NM_001301190 NM_001301193 NM_001301196 NM_001301201 NM_021158
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIB3
Alternative Splicing GalleryENSG00000101255
Gene ExpressionTRIB3 [ NCBI-GEO ]   TRIB3 [ EBI - ARRAY_EXPRESS ]   TRIB3 [ SEEK ]   TRIB3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)57761
GTEX Portal (Tissue expression)TRIB3
Human Protein AtlasENSG00000101255-TRIB3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIB3
DMDM Disease mutations57761
Blocks (Seattle)TRIB3
Human Protein Atlas [tissue]ENSG00000101255-TRIB3 [tissue]
HPRD09836
IPIIPI00941370   IPI00290307   IPI00879713   
Protein Interaction databases
FunCoupENSG00000101255
BioGRIDTRIB3
STRING (EMBL)TRIB3
ZODIACTRIB3
Ontologies - Pathways
Huge Navigator TRIB3 [HugePedia]
snp3D : Map Gene to Disease57761
BioCentury BCIQTRIB3
ClinGenTRIB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57761
Chemical/Pharm GKB GenePA25804
Clinical trialTRIB3
Miscellaneous
canSAR (ICR)TRIB3 (select the gene name)
DataMed IndexTRIB3
Probes
Litterature
PubMed115 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIB3
EVEXTRIB3
GoPubMedTRIB3
iHOPTRIB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:14:17 CET 2020

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