Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM10 (tripartite motif containing 10)

Identity

Alias (NCBI)HERF1
RFB30
RNF9
HGNC (Hugo) TRIM10
HGNC Alias symbRFB30
HERF1
HGNC Previous nameRNF9
HGNC Previous nametripartite motif-containing 10
LocusID (NCBI) 10107
Atlas_Id 75144
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30151943 and ends at 30161211 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD3G (11q23.3) / TRIM10 (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM10   10072
Cards
Entrez_Gene (NCBI)TRIM10    tripartite motif containing 10
AliasesHERF1; RFB30; RNF9
GeneCards (Weizmann)TRIM10
Ensembl hg19 (Hinxton)ENSG00000204613 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204613 [Gene_View]  ENSG00000204613 [Sequence]  chr6:30151943-30161211 [Contig_View]  TRIM10 [Vega]
ICGC DataPortalENSG00000204613
TCGA cBioPortalTRIM10
AceView (NCBI)TRIM10
Genatlas (Paris)TRIM10
SOURCE (Princeton)TRIM10
Genetics Home Reference (NIH)TRIM10
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM10  -     chr6:30151943-30161211 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM10  -     6p22.1   [Description]    (hg19-Feb_2009)
GoldenPathTRIM10 - 6p22.1 [CytoView hg19]  TRIM10 - 6p22.1 [CytoView hg38]
ImmunoBaseENSG00000204613
Genome Data Viewer NCBITRIM10 [Mapview hg19]  
OMIM605701   
Gene and transcription
Genbank (Entrez)AF220122 AF220123 AL360163 AL360164 BC093926
RefSeq transcript (Entrez)NM_006778 NM_052828
Consensus coding sequences : CCDS (NCBI)TRIM10
Gene ExpressionTRIM10 [ NCBI-GEO ]   TRIM10 [ EBI - ARRAY_EXPRESS ]   TRIM10 [ SEEK ]   TRIM10 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM10 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10107
GTEX Portal (Tissue expression)TRIM10
Human Protein AtlasENSG00000204613-TRIM10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UDY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UDY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UDY6
PhosPhoSitePlusQ9UDY6
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Butyrophylin_SPRY    ConA-like_dom_sf    PRY    SPRY_dom    TRIM10_RING-HC    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM10
SuperfamilyQ9UDY6
AlphaFold pdb e-kbQ9UDY6   
Human Protein Atlas [tissue]ENSG00000204613-TRIM10 [tissue]
HPRD05752
Protein Interaction databases
DIP (DOE-UCLA)Q9UDY6
IntAct (EBI)Q9UDY6
BioGRIDTRIM10
STRING (EMBL)TRIM10
ZODIACTRIM10
Ontologies - Pathways
QuickGOQ9UDY6
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  cytoplasm  biological_process  zinc ion binding  regulation of gene expression  protein ubiquitination  erythrocyte differentiation  innate immune response  negative regulation of viral entry into host cell  ubiquitin protein ligase activity  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  cytoplasm  biological_process  zinc ion binding  regulation of gene expression  protein ubiquitination  erythrocyte differentiation  innate immune response  negative regulation of viral entry into host cell  ubiquitin protein ligase activity  
NDEx NetworkTRIM10
Atlas of Cancer Signalling NetworkTRIM10
Wikipedia pathwaysTRIM10
Orthology - Evolution
OrthoDB10107
GeneTree (enSembl)ENSG00000204613
Phylogenetic Trees/Animal Genes : TreeFamTRIM10
Homologs : HomoloGeneTRIM10
Homology/Alignments : Family Browser (UCSC)TRIM10
Gene fusions - Rearrangements
Fusion : QuiverTRIM10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM10
dbVarTRIM10
ClinVarTRIM10
MonarchTRIM10
1000_GenomesTRIM10 
Exome Variant ServerTRIM10
GNOMAD BrowserENSG00000204613
Varsome BrowserTRIM10
ACMGTRIM10 variants
VarityQ9UDY6
Genomic Variants (DGV)TRIM10 [DGVbeta]
DECIPHERTRIM10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM10 
Mutations
ICGC Data PortalTRIM10 
TCGA Data PortalTRIM10 
Broad Tumor PortalTRIM10
OASIS PortalTRIM10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM10
Mutations and Diseases : HGMDTRIM10
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM10
DgiDB (Drug Gene Interaction Database)TRIM10
DoCM (Curated mutations)TRIM10
CIViC (Clinical Interpretations of Variants in Cancer)TRIM10
Cancer3DTRIM10
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605701   
Orphanet
DisGeNETTRIM10
MedgenTRIM10
Genetic Testing Registry TRIM10
NextProtQ9UDY6 [Medical]
GENETestsTRIM10
Target ValidationTRIM10
Huge Navigator TRIM10 [HugePedia]
ClinGenTRIM10
Clinical trials, drugs, therapy
MyCancerGenomeTRIM10
Protein Interactions : CTDTRIM10
Pharm GKB GenePA35536
PharosQ9UDY6
Clinical trialTRIM10
Miscellaneous
canSAR (ICR)TRIM10
HarmonizomeTRIM10
DataMed IndexTRIM10
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 16:26:52 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.