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TRIM10 (tripartite motif containing 10)

Identity

Alias_namesRNF9
tripartite motif-containing 10
Alias_symbol (synonym)RFB30
HERF1
Other alias
HGNC (Hugo) TRIM10
LocusID (NCBI) 10107
Atlas_Id 75144
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30151946 and ends at 30160934 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD3G (11q23.3) / TRIM10 (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM10   10072
Cards
Entrez_Gene (NCBI)TRIM10  10107  tripartite motif containing 10
AliasesHERF1; RFB30; RNF9
GeneCards (Weizmann)TRIM10
Ensembl hg19 (Hinxton)ENSG00000204613 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204613 [Gene_View]  ENSG00000204613 [Sequence]  chr6:30151946-30160934 [Contig_View]  TRIM10 [Vega]
ICGC DataPortalENSG00000204613
TCGA cBioPortalTRIM10
AceView (NCBI)TRIM10
Genatlas (Paris)TRIM10
WikiGenes10107
SOURCE (Princeton)TRIM10
Genetics Home Reference (NIH)TRIM10
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM10  -     chr6:30151946-30160934 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM10  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM10 - 6p22.1 [CytoView hg19]  TRIM10 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBITRIM10 [Mapview hg19]  TRIM10 [Mapview hg38]
OMIM605701   
Gene and transcription
Genbank (Entrez)AF220122 AF220123 AL360163 AL360164 BC093926
RefSeq transcript (Entrez)NM_006778 NM_052828
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)TRIM10
Cluster EST : UnigeneHs.709483 [ NCBI ]
CGAP (NCI)Hs.709483
Alternative Splicing GalleryENSG00000204613
Gene ExpressionTRIM10 [ NCBI-GEO ]   TRIM10 [ EBI - ARRAY_EXPRESS ]   TRIM10 [ SEEK ]   TRIM10 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10107
GTEX Portal (Tissue expression)TRIM10
Human Protein AtlasENSG00000204613-TRIM10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UDY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UDY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UDY6
Splice isoforms : SwissVarQ9UDY6
PhosPhoSitePlusQ9UDY6
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM10
DMDM Disease mutations10107
Blocks (Seattle)TRIM10
SuperfamilyQ9UDY6
Human Protein Atlas [tissue]ENSG00000204613-TRIM10 [tissue]
Peptide AtlasQ9UDY6
HPRD05752
IPIIPI00009524   IPI00872419   IPI00816351   IPI00216582   
Protein Interaction databases
DIP (DOE-UCLA)Q9UDY6
IntAct (EBI)Q9UDY6
FunCoupENSG00000204613
BioGRIDTRIM10
STRING (EMBL)TRIM10
ZODIACTRIM10
Ontologies - Pathways
QuickGOQ9UDY6
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  biological_process  zinc ion binding  erythrocyte differentiation  innate immune response  negative regulation of viral entry into host cell  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  biological_process  zinc ion binding  erythrocyte differentiation  innate immune response  negative regulation of viral entry into host cell  
NDEx NetworkTRIM10
Atlas of Cancer Signalling NetworkTRIM10
Wikipedia pathwaysTRIM10
Orthology - Evolution
OrthoDB10107
GeneTree (enSembl)ENSG00000204613
Phylogenetic Trees/Animal Genes : TreeFamTRIM10
HOVERGENQ9UDY6
HOGENOMQ9UDY6
Homologs : HomoloGeneTRIM10
Homology/Alignments : Family Browser (UCSC)TRIM10
Gene fusions - Rearrangements
Fusion : QuiverTRIM10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM10
dbVarTRIM10
ClinVarTRIM10
1000_GenomesTRIM10 
Exome Variant ServerTRIM10
ExAC (Exome Aggregation Consortium)ENSG00000204613
GNOMAD BrowserENSG00000204613
Varsome BrowserTRIM10
Genetic variants : HAPMAP10107
Genomic Variants (DGV)TRIM10 [DGVbeta]
DECIPHERTRIM10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM10 
Mutations
ICGC Data PortalTRIM10 
TCGA Data PortalTRIM10 
Broad Tumor PortalTRIM10
OASIS PortalTRIM10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM10
DgiDB (Drug Gene Interaction Database)TRIM10
DoCM (Curated mutations)TRIM10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM10 (select a term)
intoGenTRIM10
Cancer3DTRIM10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605701   
Orphanet
DisGeNETTRIM10
MedgenTRIM10
Genetic Testing Registry TRIM10
NextProtQ9UDY6 [Medical]
TSGene10107
GENETestsTRIM10
Target ValidationTRIM10
Huge Navigator TRIM10 [HugePedia]
snp3D : Map Gene to Disease10107
BioCentury BCIQTRIM10
ClinGenTRIM10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10107
Chemical/Pharm GKB GenePA35536
Clinical trialTRIM10
Miscellaneous
canSAR (ICR)TRIM10 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM10
EVEXTRIM10
GoPubMedTRIM10
iHOPTRIM10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:36:34 CEST 2018

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