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TRIM11 (tripartite motif containing 11)

Identity

Alias_namestripartite motif-containing 11
Alias_symbol (synonym)RNF92
BIA1
Other alias
HGNC (Hugo) TRIM11
LocusID (NCBI) 81559
Atlas_Id 53786
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228393676 and ends at 228406816 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SIPA1L2 (1q42.2) / TRIM11 (1q42.13)TRIM11 (1q42.13) / SLC2A5 (1p36.23)SIPA1L2 1q42.2 / TRIM11 1q42.13
TRIM11 1q42.13 / SLC2A5 1p36.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM11   16281
Cards
Entrez_Gene (NCBI)TRIM11  81559  tripartite motif containing 11
AliasesBIA1; RNF92
GeneCards (Weizmann)TRIM11
Ensembl hg19 (Hinxton)ENSG00000154370 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154370 [Gene_View]  chr1:228393676-228406816 [Contig_View]  TRIM11 [Vega]
ICGC DataPortalENSG00000154370
TCGA cBioPortalTRIM11
AceView (NCBI)TRIM11
Genatlas (Paris)TRIM11
WikiGenes81559
SOURCE (Princeton)TRIM11
Genetics Home Reference (NIH)TRIM11
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM11  -     chr1:228393676-228406816 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM11  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblTRIM11 - 1q42.13 [CytoView hg19]  TRIM11 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBITRIM11 [Mapview hg19]  TRIM11 [Mapview hg38]
OMIM607868   
Gene and transcription
Genbank (Entrez)AF220125 AF327056 AK074866 AK097825 AK226119
RefSeq transcript (Entrez)NM_145214
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM11
Cluster EST : UnigeneHs.13543 [ NCBI ]
CGAP (NCI)Hs.13543
Alternative Splicing GalleryENSG00000154370
Gene ExpressionTRIM11 [ NCBI-GEO ]   TRIM11 [ EBI - ARRAY_EXPRESS ]   TRIM11 [ SEEK ]   TRIM11 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81559
GTEX Portal (Tissue expression)TRIM11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96F44   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96F44  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96F44
Splice isoforms : SwissVarQ96F44
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ96F44
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM11
DMDM Disease mutations81559
Blocks (Seattle)TRIM11
SuperfamilyQ96F44
Human Protein AtlasENSG00000154370
Peptide AtlasQ96F44
HPRD07429
IPIIPI00219527   IPI00385975   IPI00969554   
Protein Interaction databases
DIP (DOE-UCLA)Q96F44
IntAct (EBI)Q96F44
FunCoupENSG00000154370
BioGRIDTRIM11
STRING (EMBL)TRIM11
ZODIACTRIM11
Ontologies - Pathways
QuickGOQ96F44
Ontology : AmiGOprotein binding  nucleus  cytoplasm  cytosol  transcription factor binding  zinc ion binding  protein ubiquitination  protein domain specific binding  negative regulation of viral transcription  innate immune response  negative regulation of transcription, DNA-templated  negative regulation of viral entry into host cell  positive regulation of viral entry into host cell  negative regulation of neurogenesis  defense response to virus  ubiquitin protein ligase activity  negative regulation of viral release from host cell  negative regulation of viral release from host cell  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  cytosol  transcription factor binding  zinc ion binding  protein ubiquitination  protein domain specific binding  negative regulation of viral transcription  innate immune response  negative regulation of transcription, DNA-templated  negative regulation of viral entry into host cell  positive regulation of viral entry into host cell  negative regulation of neurogenesis  defense response to virus  ubiquitin protein ligase activity  negative regulation of viral release from host cell  negative regulation of viral release from host cell  
NDEx NetworkTRIM11
Atlas of Cancer Signalling NetworkTRIM11
Wikipedia pathwaysTRIM11
Orthology - Evolution
OrthoDB81559
GeneTree (enSembl)ENSG00000154370
Phylogenetic Trees/Animal Genes : TreeFamTRIM11
HOVERGENQ96F44
HOGENOMQ96F44
Homologs : HomoloGeneTRIM11
Homology/Alignments : Family Browser (UCSC)TRIM11
Gene fusions - Rearrangements
Fusion : MitelmanSIPA1L2/TRIM11 [1q42.2/1q42.13]  [t(1;1)(q42;q42)]  
Fusion : MitelmanTRIM11/SLC2A5 [1q42.13/1p36.23]  [t(1;1)(p36;q42)]  
Fusion: TCGASIPA1L2 1q42.2 TRIM11 1q42.13 PRAD
Fusion: TCGATRIM11 1q42.13 SLC2A5 1p36.23 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM11
dbVarTRIM11
ClinVarTRIM11
1000_GenomesTRIM11 
Exome Variant ServerTRIM11
ExAC (Exome Aggregation Consortium)TRIM11 (select the gene name)
Genetic variants : HAPMAP81559
Genomic Variants (DGV)TRIM11 [DGVbeta]
DECIPHERTRIM11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM11 
Mutations
ICGC Data PortalTRIM11 
TCGA Data PortalTRIM11 
Broad Tumor PortalTRIM11
OASIS PortalTRIM11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM11
DgiDB (Drug Gene Interaction Database)TRIM11
DoCM (Curated mutations)TRIM11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM11 (select a term)
intoGenTRIM11
Cancer3DTRIM11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607868   
Orphanet
MedgenTRIM11
Genetic Testing Registry TRIM11
NextProtQ96F44 [Medical]
TSGene81559
GENETestsTRIM11
Target ValidationTRIM11
Huge Navigator TRIM11 [HugePedia]
snp3D : Map Gene to Disease81559
BioCentury BCIQTRIM11
ClinGenTRIM11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81559
Chemical/Pharm GKB GenePA38112
Clinical trialTRIM11
Miscellaneous
canSAR (ICR)TRIM11 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM11
EVEXTRIM11
GoPubMedTRIM11
iHOPTRIM11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:10:27 CEST 2017

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