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TRIM13 (tripartite motif containing 13)

Identity

Other namesCAR
DLEU5
LEU5
RFP2
RNF77
HGNC (Hugo) TRIM13
LocusID (NCBI) 10206
Location 13q14.2
Location_base_pair Starts at 50571143 and ends at 50592603 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRIM13   9976
Entrez_Gene (NCBI)TRIM13  10206  tripartite motif containing 13
Cards
GeneCards (Weizmann)TRIM13
Ensembl (Hinxton)ENSG00000204977 [Gene_View]  chr13:50571143-50592603 [Contig_View]  TRIM13 [Vega]
AceView (NCBI)TRIM13
Genatlas (Paris)TRIM13
SOURCE (Stanford)NM_001007278 NM_005798 NM_052811 NM_213590
Genomic and cartography
GoldenPath (UCSC)TRIM13  -  13q14.2   chr13:50571143-50592603 +  13q14.2   [Description]    (hg19-Feb_2009)
EnsemblTRIM13 - 13q14.2 [CytoView]
Mapping of homologs : NCBITRIM13 [Mapview]
OMIM605661   
Gene and transcription
Genbank (Entrez)AF220127 AF220128 AF241850 AJ224819 AK001806
RefSeq transcript (SRS)NM_001007278 NM_005798 NM_052811 NM_213590
RefSeq transcript (Entrez)NM_001007278 NM_005798 NM_052811 NM_213590
RefSeq genomic (SRS)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838074 NW_004078077
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838074 NW_004078077
Consensus coding sequences : CCDS (NCBI)TRIM13
Cluster EST : UnigeneHs.436922 [ SRS ] Hs.436922 [ NCBI ]
CGAP (NCI)Hs.436922
Alternative Splicing : Fast-db (Paris)GSHG0033204
Alternative Splicing GalleryENSG00000204977
Gene ExpressionTRIM13 [ NCBI-GEO ]   TRIM13 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60858 (SRS) O60858 (Uniprot)
NextProtO60858
With graphics : InterProO60858
Splice isoforms : SwissVarO60858(Swissvar)
Domaine pattern : Prosite (SRS)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domains : Interpro (EBI)Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Related proteins : CluSTrO60858
Domain families : Pfam (SRS)zf-B_box (PF00643)   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
DMDM10206
Blocks (Seattle)O60858
Human Protein AtlasENSG00000204977
HPRD10414
IPIIPI00607858   IPI00477161   IPI00944555   IPI01011538   
Protein Interaction databases
DIP (DOE-UCLA)O60858
IntAct (EBI)O60858
FunCoupENSG00000204977
REACTOMETRIM13
Protein Interaction Database10206
BioGRIDTRIM13
InParanoidO60858
Interologous Interaction database O60858
IntegromeDBTRIM13
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TRIM13
SNP (GeneSNP Utah)TRIM13
SNP : HGBaseTRIM13
Genetic variants : HAPMAPTRIM13
Somatic Mutations in Cancer : COSMICTRIM13 
CONAN: Copy Number AnalysisTRIM13 
Mutations and Diseases : HGMDTRIM13
OMIM605661   
GENETests605661   
Disease Genetic AssociationTRIM13
Huge Navigator TRIM13 [HugePedia]  TRIM13 [HugeCancerGEM]
Genomic VariantsTRIM13  TRIM13 [DGVbeta]
snp3D : Map Gene to Disease10206
General knowledge
Homologs : HomoloGeneTRIM13
Homology/Alignments : Family Browser (UCSC)TRIM13
Phylogenetic Trees/Animal Genes : TreeFamTRIM13
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.- [ Enzyme-SRS ]   6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
Chemical/Protein Interactions : CTD10206
Chemical/Pharm GKB GenePA162406947
Clinical trialTRIM13
Cancer Resource (Charite)ENSG00000204977
Ontology : AmiGOubiquitin-protein ligase activity  signal transducer activity  protein binding  cytoplasm  endoplasmic reticulum membrane  signal transduction  zinc ion binding  anatomical structure morphogenesis  response to gamma radiation  positive regulation of cell death  integral to membrane  positive regulation of macroautophagy  ER-associated protein catabolic process  positive regulation of I-kappaB kinase/NF-kappaB cascade  proteasomal ubiquitin-dependent protein catabolic process  metal ion binding  protein autoubiquitination  perinuclear endoplasmic reticulum  
Ontology : EGO-EBIubiquitin-protein ligase activity  signal transducer activity  protein binding  cytoplasm  endoplasmic reticulum membrane  signal transduction  zinc ion binding  anatomical structure morphogenesis  response to gamma radiation  positive regulation of cell death  integral to membrane  positive regulation of macroautophagy  ER-associated protein catabolic process  positive regulation of I-kappaB kinase/NF-kappaB cascade  proteasomal ubiquitin-dependent protein catabolic process  metal ion binding  protein autoubiquitination  perinuclear endoplasmic reticulum  
Other databases
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
PubGeneTRIM13
iHOPTRIM13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:28:29 CEST 2013
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