Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM13 (tripartite motif containing 13)

Identity

Other namesCAR
DLEU5
LEU5
RFP2
RNF77
HGNC (Hugo) TRIM13
LocusID (NCBI) 10206
Location 13q14.2
Location_base_pair Starts at 50571143 and ends at 50592603 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRIM13   9976
Cards
Entrez_Gene (NCBI)TRIM13  10206  tripartite motif containing 13
GeneCards (Weizmann)TRIM13
Ensembl hg19 (Hinxton)ENSG00000204977 [Gene_View]  chr13:50571143-50592603 [Contig_View]  TRIM13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000204977 [Gene_View]  chr13:50571143-50592603 [Contig_View]  TRIM13 [Vega]
ICGC DataPortalENSG00000204977
cBioPortalTRIM13
AceView (NCBI)TRIM13
Genatlas (Paris)TRIM13
WikiGenes10206
SOURCE (Princeton)TRIM13
Genomic and cartography
GoldenPath hg19 (UCSC)TRIM13  -     chr13:50571143-50592603 +  13q14.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRIM13  -     13q14.2   [Description]    (hg38-Dec_2013)
EnsemblTRIM13 - 13q14.2 [CytoView hg19]  TRIM13 - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBITRIM13 [Mapview hg19]  TRIM13 [Mapview hg38]
OMIM605661   
Gene and transcription
Genbank (Entrez)AF220127 AF220128 AF241850 AJ224819 AK001806
RefSeq transcript (Entrez)NM_001007278 NM_005798 NM_052811 NM_213590
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838074 NW_004929388
Consensus coding sequences : CCDS (NCBI)TRIM13
Cluster EST : UnigeneHs.436922 [ NCBI ]
CGAP (NCI)Hs.436922
Alternative Splicing : Fast-db (Paris)GSHG0033204
Alternative Splicing GalleryENSG00000204977
Gene ExpressionTRIM13 [ NCBI-GEO ]     TRIM13 [ SEEK ]   TRIM13 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60858 (Uniprot)
NextProtO60858  [Medical]
With graphics : InterProO60858
Splice isoforms : SwissVarO60858 (Swissvar)
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Related proteins : CluSTrO60858
Domain families : Pfam (Sanger)zf-B_box (PF00643)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam00643    pfam13639   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
DMDM Disease mutations10206
Blocks (Seattle)O60858
Human Protein AtlasENSG00000204977
Peptide AtlasO60858
HPRD10414
IPIIPI00607858   IPI00477161   IPI00944555   IPI01011538   
Protein Interaction databases
DIP (DOE-UCLA)O60858
IntAct (EBI)O60858
FunCoupENSG00000204977
BioGRIDTRIM13
IntegromeDBTRIM13
STRING (EMBL)TRIM13
Ontologies - Pathways
QuickGOO60858
Ontology : AmiGOubiquitin-protein transferase activity  signal transducer activity  protein binding  cytoplasm  endoplasmic reticulum membrane  signal transduction  zinc ion binding  anatomical structure morphogenesis  response to gamma radiation  positive regulation of cell death  integral component of membrane  positive regulation of macroautophagy  ligase activity  ER-associated ubiquitin-dependent protein catabolic process  negative regulation of viral transcription  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of I-kappaB kinase/NF-kappaB signaling  proteasome-mediated ubiquitin-dependent protein catabolic process  innate immune response  positive regulation of NF-kappaB transcription factor activity  protein autoubiquitination  perinuclear endoplasmic reticulum  negative regulation of viral release from host cell  
Ontology : EGO-EBIubiquitin-protein transferase activity  signal transducer activity  protein binding  cytoplasm  endoplasmic reticulum membrane  signal transduction  zinc ion binding  anatomical structure morphogenesis  response to gamma radiation  positive regulation of cell death  integral component of membrane  positive regulation of macroautophagy  ligase activity  ER-associated ubiquitin-dependent protein catabolic process  negative regulation of viral transcription  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of I-kappaB kinase/NF-kappaB signaling  proteasome-mediated ubiquitin-dependent protein catabolic process  innate immune response  positive regulation of NF-kappaB transcription factor activity  protein autoubiquitination  perinuclear endoplasmic reticulum  negative regulation of viral release from host cell  
Protein Interaction DatabaseTRIM13
DoCM (Curated mutations)TRIM13
Wikipedia pathwaysTRIM13
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerTRIM13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM13
dbVarTRIM13
ClinVarTRIM13
1000_GenomesTRIM13 
Exome Variant ServerTRIM13
SNP (GeneSNP Utah)TRIM13
SNP : HGBaseTRIM13
Genetic variants : HAPMAPTRIM13
Genomic VariantsTRIM13  TRIM13 [DGVbeta]
Mutations
ICGC Data PortalENSG00000204977 
Somatic Mutations in Cancer : COSMICTRIM13 
CONAN: Copy Number AnalysisTRIM13 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:50571143-50592603
Mutations and Diseases : HGMDTRIM13
OMIM605661   
MedgenTRIM13
NextProtO60858 [Medical]
GENETestsTRIM13
Disease Genetic AssociationTRIM13
Huge Navigator TRIM13 [HugePedia]  TRIM13 [HugeCancerGEM]
snp3D : Map Gene to Disease10206
DGIdb (Drug Gene Interaction db)TRIM13
General knowledge
Homologs : HomoloGeneTRIM13
Homology/Alignments : Family Browser (UCSC)TRIM13
Phylogenetic Trees/Animal Genes : TreeFamTRIM13
Chemical/Protein Interactions : CTD10206
Chemical/Pharm GKB GenePA162406947
Clinical trialTRIM13
Cancer Resource (Charite)ENSG00000204977
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineTRIM13
GoPubMedTRIM13
iHOPTRIM13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Dec 21 02:04:29 CET 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.