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TRIM13 (tripartite motif containing 13)

Identity

Other namesCAR
DLEU5
LEU5
RFP2
RNF77
HGNC (Hugo) TRIM13
LocusID (NCBI) 10206
Location 13q14.2
Location_base_pair Starts at 50571143 and ends at 50592603 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRIM13   9976
Cards
Entrez_Gene (NCBI)TRIM13  10206  tripartite motif containing 13
GeneCards (Weizmann)TRIM13
Ensembl (Hinxton)ENSG00000204977 [Gene_View]  chr13:50571143-50592603 [Contig_View]  TRIM13 [Vega]
ICGC DataPortalENSG00000204977
cBioPortalTRIM13
AceView (NCBI)TRIM13
Genatlas (Paris)TRIM13
WikiGenes10206
SOURCE (Princeton)NM_001007278 NM_005798 NM_052811 NM_213590
Genomic and cartography
GoldenPath (UCSC)TRIM13  -  13q14.2   chr13:50571143-50592603 +  13q14.2   [Description]    (hg19-Feb_2009)
EnsemblTRIM13 - 13q14.2 [CytoView]
Mapping of homologs : NCBITRIM13 [Mapview]
OMIM605661   
Gene and transcription
Genbank (Entrez)AF220127 AF220128 AF241850 AJ224819 AK001806
RefSeq transcript (Entrez)NM_001007278 NM_005798 NM_052811 NM_213590
RefSeq genomic (Entrez)AC_000145 NC_000013 NC_018924 NT_024524 NW_001838074 NW_004929388
Consensus coding sequences : CCDS (NCBI)TRIM13
Cluster EST : UnigeneHs.436922 [ NCBI ]
CGAP (NCI)Hs.436922
Alternative Splicing : Fast-db (Paris)GSHG0033204
Alternative Splicing GalleryENSG00000204977
Gene ExpressionTRIM13 [ NCBI-GEO ]     TRIM13 [ SEEK ]   TRIM13 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60858 (Uniprot)
NextProtO60858  [Medical]
With graphics : InterProO60858
Splice isoforms : SwissVarO60858 (Swissvar)
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.-6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Znf_B-box [organisation]   Znf_RING [organisation]   Znf_RING/FYVE/PHD [organisation]   Znf_RING_CS [organisation]  
Related proteins : CluSTrO60858
Domain families : Pfam (Sanger)zf-B_box (PF00643)    zf-RING_2 (PF13639)   
Domain families : Pfam (NCBI)pfam00643    pfam13639   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
DMDM Disease mutations10206
Blocks (Seattle)O60858
Human Protein AtlasENSG00000204977 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO60858
HPRD10414
IPIIPI00607858   IPI00477161   IPI00944555   IPI01011538   
Protein Interaction databases
DIP (DOE-UCLA)O60858
IntAct (EBI)O60858
FunCoupENSG00000204977
BioGRIDTRIM13
InParanoidO60858
Interologous Interaction database O60858
IntegromeDBTRIM13
STRING (EMBL)TRIM13
Ontologies - Pathways
Ontology : AmiGOubiquitin-protein transferase activity  signal transducer activity  protein binding  cytoplasm  endoplasmic reticulum membrane  signal transduction  zinc ion binding  anatomical structure morphogenesis  response to gamma radiation  positive regulation of cell death  integral component of membrane  positive regulation of macroautophagy  ligase activity  ER-associated ubiquitin-dependent protein catabolic process  negative regulation of viral transcription  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of I-kappaB kinase/NF-kappaB signaling  proteasome-mediated ubiquitin-dependent protein catabolic process  innate immune response  positive regulation of NF-kappaB transcription factor activity  protein autoubiquitination  perinuclear endoplasmic reticulum  negative regulation of viral release from host cell  
Ontology : EGO-EBIubiquitin-protein transferase activity  signal transducer activity  protein binding  cytoplasm  endoplasmic reticulum membrane  signal transduction  zinc ion binding  anatomical structure morphogenesis  response to gamma radiation  positive regulation of cell death  integral component of membrane  positive regulation of macroautophagy  ligase activity  ER-associated ubiquitin-dependent protein catabolic process  negative regulation of viral transcription  positive regulation of I-kappaB kinase/NF-kappaB signaling  positive regulation of I-kappaB kinase/NF-kappaB signaling  proteasome-mediated ubiquitin-dependent protein catabolic process  innate immune response  positive regulation of NF-kappaB transcription factor activity  protein autoubiquitination  perinuclear endoplasmic reticulum  negative regulation of viral release from host cell  
Protein Interaction DatabaseTRIM13
Wikipedia pathwaysTRIM13
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TRIM13
snp3D : Map Gene to Disease10206
SNP (GeneSNP Utah)TRIM13
SNP : HGBaseTRIM13
Genetic variants : HAPMAPTRIM13
Exome VariantTRIM13
1000_GenomesTRIM13 
ICGC programENSG00000204977 
Somatic Mutations in Cancer : COSMICTRIM13 
CONAN: Copy Number AnalysisTRIM13 
Mutations and Diseases : HGMDTRIM13
Genomic VariantsTRIM13  TRIM13 [DGVbeta]
dbVarTRIM13
ClinVarTRIM13
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM605661   
MedgenTRIM13
GENETestsTRIM13
Disease Genetic AssociationTRIM13
Huge Navigator TRIM13 [HugePedia]  TRIM13 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTRIM13
Homology/Alignments : Family Browser (UCSC)TRIM13
Phylogenetic Trees/Animal Genes : TreeFamTRIM13
Chemical/Protein Interactions : CTD10206
Chemical/Pharm GKB GenePA162406947
Clinical trialTRIM13
Cancer Resource (Charite)ENSG00000204977
Other databases
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
CoreMineTRIM13
iHOPTRIM13
OncoSearchTRIM13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:50:53 CEST 2014

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