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TRIM14 (tripartite motif containing 14)

Identity

Other alias-
HGNC (Hugo) TRIM14
LocusID (NCBI) 9830
Atlas_Id 56768
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 98084353 and ends at 98119353 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABCA2 (9q34.3) / TRIM14 (9q22.33)ADI1 (2p25.3) / TRIM14 (9q22.33)RUVBL1 (3q21.3) / TRIM14 (9q22.33)
TRIM14 (9q22.33) / PATL1 (11q12.1)TRIM14 (9q22.33) / TRIM14 (9q22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM14   16283
Cards
Entrez_Gene (NCBI)TRIM14  9830  tripartite motif containing 14
Aliases
GeneCards (Weizmann)TRIM14
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:98084353-98119353 [Contig_View]  TRIM14 [Vega]
TCGA cBioPortalTRIM14
AceView (NCBI)TRIM14
Genatlas (Paris)TRIM14
WikiGenes9830
SOURCE (Princeton)TRIM14
Genetics Home Reference (NIH)TRIM14
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM14  -     chr9:98084353-98119353 -  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM14  -     9q22.33   [Description]    (hg19-Feb_2009)
EnsemblTRIM14 - 9q22.33 [CytoView hg19]  TRIM14 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBITRIM14 [Mapview hg19]  TRIM14 [Mapview hg38]
OMIM606556   
Gene and transcription
Genbank (Entrez)AA469446 AF220130 AF220131 AK055833 AK097480
RefSeq transcript (Entrez)NM_014788 NM_033219 NM_033220 NM_033221
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM14
Cluster EST : UnigeneHs.665191 [ NCBI ]
CGAP (NCI)Hs.665191
Gene ExpressionTRIM14 [ NCBI-GEO ]   TRIM14 [ EBI - ARRAY_EXPRESS ]   TRIM14 [ SEEK ]   TRIM14 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM14 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9830
GTEX Portal (Tissue expression)TRIM14
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14142   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14142  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14142
Splice isoforms : SwissVarQ14142
PhosPhoSitePlusQ14142
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM14
DMDM Disease mutations9830
Blocks (Seattle)TRIM14
SuperfamilyQ14142
Peptide AtlasQ14142
IPIIPI00478468   IPI00747347   IPI01013161   IPI00446861   IPI00604454   IPI00981925   
Protein Interaction databases
DIP (DOE-UCLA)Q14142
IntAct (EBI)Q14142
BioGRIDTRIM14
STRING (EMBL)TRIM14
ZODIACTRIM14
Ontologies - Pathways
QuickGOQ14142
Ontology : AmiGOmolecular_function  intracellular  zinc ion binding  negative regulation of viral transcription  innate immune response  positive regulation of sequence-specific DNA binding transcription factor activity  positive regulation of NF-kappaB transcription factor activity  
Ontology : EGO-EBImolecular_function  intracellular  zinc ion binding  negative regulation of viral transcription  innate immune response  positive regulation of sequence-specific DNA binding transcription factor activity  positive regulation of NF-kappaB transcription factor activity  
NDEx NetworkTRIM14
Atlas of Cancer Signalling NetworkTRIM14
Wikipedia pathwaysTRIM14
Orthology - Evolution
OrthoDB9830
Phylogenetic Trees/Animal Genes : TreeFamTRIM14
HOVERGENQ14142
HOGENOMQ14142
Homologs : HomoloGeneTRIM14
Homology/Alignments : Family Browser (UCSC)TRIM14
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM14 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM14
dbVarTRIM14
ClinVarTRIM14
1000_GenomesTRIM14 
Exome Variant ServerTRIM14
ExAC (Exome Aggregation Consortium)TRIM14 (select the gene name)
Genetic variants : HAPMAP9830
Genomic Variants (DGV)TRIM14 [DGVbeta]
DECIPHERTRIM14 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM14 
Mutations
ICGC Data PortalTRIM14 
TCGA Data PortalTRIM14 
Broad Tumor PortalTRIM14
OASIS PortalTRIM14 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM14  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM14
BioMutasearch TRIM14
DgiDB (Drug Gene Interaction Database)TRIM14
DoCM (Curated mutations)TRIM14 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM14 (select a term)
intoGenTRIM14
Cancer3DTRIM14(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606556   
Orphanet
MedgenTRIM14
Genetic Testing Registry TRIM14
NextProtQ14142 [Medical]
TSGene9830
GENETestsTRIM14
Target ValidationTRIM14
Huge Navigator TRIM14 [HugePedia]
snp3D : Map Gene to Disease9830
BioCentury BCIQTRIM14
ClinGenTRIM14
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9830
Chemical/Pharm GKB GenePA38113
Clinical trialTRIM14
Miscellaneous
canSAR (ICR)TRIM14 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM14
EVEXTRIM14
GoPubMedTRIM14
iHOPTRIM14
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:10:27 CEST 2017

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