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TRIM16 (tripartite motif containing 16)

Identity

Alias_namestripartite motif-containing 16
Alias_symbol (synonym)EBBP
Other alias
HGNC (Hugo) TRIM16
LocusID (NCBI) 10626
Atlas_Id 50870
Location 17p12  [Link to chromosome band 17p12]
Location_base_pair Starts at 15531280 and ends at 15586193 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TRIM16 (17p12) / TRIM16 (17p12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM16   17241
Cards
Entrez_Gene (NCBI)TRIM16  10626  tripartite motif containing 16
AliasesEBBP
GeneCards (Weizmann)TRIM16
Ensembl hg19 (Hinxton)ENSG00000221926 [Gene_View]  chr17:15531280-15586193 [Contig_View]  TRIM16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000221926 [Gene_View]  chr17:15531280-15586193 [Contig_View]  TRIM16 [Vega]
ICGC DataPortalENSG00000221926
TCGA cBioPortalTRIM16
AceView (NCBI)TRIM16
Genatlas (Paris)TRIM16
WikiGenes10626
SOURCE (Princeton)TRIM16
Genetics Home Reference (NIH)TRIM16
Genomic and cartography
GoldenPath hg19 (UCSC)TRIM16  -     chr17:15531280-15586193 -  17p12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)TRIM16  -     17p12   [Description]    (hg38-Dec_2013)
EnsemblTRIM16 - 17p12 [CytoView hg19]  TRIM16 - 17p12 [CytoView hg38]
Mapping of homologs : NCBITRIM16 [Mapview hg19]  TRIM16 [Mapview hg38]
OMIM609505   
Gene and transcription
Genbank (Entrez)AF096870 AK002035 AK056026 AK314557 BC001564
RefSeq transcript (Entrez)NM_006470
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)TRIM16
Cluster EST : UnigeneHs.123534 [ NCBI ]
CGAP (NCI)Hs.123534
Alternative Splicing GalleryENSG00000221926
Gene ExpressionTRIM16 [ NCBI-GEO ]   TRIM16 [ EBI - ARRAY_EXPRESS ]   TRIM16 [ SEEK ]   TRIM16 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10626
GTEX Portal (Tissue expression)TRIM16
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95361   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95361  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95361
Splice isoforms : SwissVarO95361
PhosPhoSitePlusO95361
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    Znf_B-box   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM16
DMDM Disease mutations10626
Blocks (Seattle)TRIM16
SuperfamilyO95361
Human Protein AtlasENSG00000221926
Peptide AtlasO95361
HPRD15552
IPIIPI00007955   IPI00789219   
Protein Interaction databases
DIP (DOE-UCLA)O95361
IntAct (EBI)O95361
FunCoupENSG00000221926
BioGRIDTRIM16
STRING (EMBL)TRIM16
ZODIACTRIM16
Ontologies - Pathways
QuickGOO95361
Ontology : AmiGODNA binding  protein binding  cytoplasm  zinc ion binding  PML body  interleukin-1 binding  NACHT domain binding  response to retinoic acid  histone H3 acetylation  histone H4 acetylation  positive regulation of keratinocyte differentiation  positive regulation of transcription, DNA-templated  response to organophosphorus  positive regulation of retinoic acid receptor signaling pathway  positive regulation of interleukin-1 beta secretion  response to growth hormone  
Ontology : EGO-EBIDNA binding  protein binding  cytoplasm  zinc ion binding  PML body  interleukin-1 binding  NACHT domain binding  response to retinoic acid  histone H3 acetylation  histone H4 acetylation  positive regulation of keratinocyte differentiation  positive regulation of transcription, DNA-templated  response to organophosphorus  positive regulation of retinoic acid receptor signaling pathway  positive regulation of interleukin-1 beta secretion  response to growth hormone  
NDEx NetworkTRIM16
Atlas of Cancer Signalling NetworkTRIM16
Wikipedia pathwaysTRIM16
Orthology - Evolution
OrthoDB10626
GeneTree (enSembl)ENSG00000221926
Phylogenetic Trees/Animal Genes : TreeFamTRIM16
HOVERGENO95361
HOGENOMO95361
Homologs : HomoloGeneTRIM16
Homology/Alignments : Family Browser (UCSC)TRIM16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM16
dbVarTRIM16
ClinVarTRIM16
1000_GenomesTRIM16 
Exome Variant ServerTRIM16
ExAC (Exome Aggregation Consortium)TRIM16 (select the gene name)
Genetic variants : HAPMAP10626
Genomic Variants (DGV)TRIM16 [DGVbeta]
DECIPHER (Syndromes)17:15531280-15586193  ENSG00000221926
CONAN: Copy Number AnalysisTRIM16 
Mutations
ICGC Data PortalTRIM16 
TCGA Data PortalTRIM16 
Broad Tumor PortalTRIM16
OASIS PortalTRIM16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM16
DgiDB (Drug Gene Interaction Database)TRIM16
DoCM (Curated mutations)TRIM16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM16 (select a term)
intoGenTRIM16
Cancer3DTRIM16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609505   
Orphanet
MedgenTRIM16
Genetic Testing Registry TRIM16
NextProtO95361 [Medical]
TSGene10626
GENETestsTRIM16
Huge Navigator TRIM16 [HugePedia]
snp3D : Map Gene to Disease10626
BioCentury BCIQTRIM16
ClinGenTRIM16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10626
Chemical/Pharm GKB GenePA38215
Clinical trialTRIM16
Miscellaneous
canSAR (ICR)TRIM16 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM16
EVEXTRIM16
GoPubMedTRIM16
iHOPTRIM16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:23:25 CEST 2017

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