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TRIM16L (tripartite motif containing 16 like)

Identity

Alias (NCBI)TRIM70
HGNC (Hugo) TRIM16L
HGNC Alias symbTRIM70
HGNC Previous nametripartite motif-containing 16-like
LocusID (NCBI) 147166
Atlas_Id 75147
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18697998 and ends at 18704547 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM16L (17p11.2) / METTL21A (2q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM16L   32670
Cards
Entrez_Gene (NCBI)TRIM16L    tripartite motif containing 16 like
AliasesTRIM70
GeneCards (Weizmann)TRIM16L
Ensembl hg19 (Hinxton)ENSG00000108448 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108448 [Gene_View]  ENSG00000108448 [Sequence]  chr17:18697998-18704547 [Contig_View]  TRIM16L [Vega]
ICGC DataPortalENSG00000108448
TCGA cBioPortalTRIM16L
AceView (NCBI)TRIM16L
Genatlas (Paris)TRIM16L
SOURCE (Princeton)TRIM16L
Genetics Home Reference (NIH)TRIM16L
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM16L  -     chr17:18697998-18704547 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM16L  -     17p11.2   [Description]    (hg19-Feb_2009)
GoldenPathTRIM16L - 17p11.2 [CytoView hg19]  TRIM16L - 17p11.2 [CytoView hg38]
ImmunoBaseENSG00000108448
Genome Data Viewer NCBITRIM16L [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK293428 AK298836 AK301639 AK301647 AK316368
RefSeq transcript (Entrez)NM_001037330 NM_001353219 NM_001353220 NM_001353221 NM_001353222 NM_001353223 NM_001353224 NM_001353225 NM_001353226
Consensus coding sequences : CCDS (NCBI)TRIM16L
Gene ExpressionTRIM16L [ NCBI-GEO ]   TRIM16L [ EBI - ARRAY_EXPRESS ]   TRIM16L [ SEEK ]   TRIM16L [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM16L [ Firebrowse - Broad ]
GenevisibleExpression of TRIM16L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147166
GTEX Portal (Tissue expression)TRIM16L
Human Protein AtlasENSG00000108448-TRIM16L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ309B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ309B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ309B1
PhosPhoSitePlusQ309B1
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Butyrophylin_SPRY    ConA-like_dom_sf    PRY    SPRY_dom   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM16L
SuperfamilyQ309B1
AlphaFold pdb e-kbQ309B1   
Human Protein Atlas [tissue]ENSG00000108448-TRIM16L [tissue]
HPRD18731
Protein Interaction databases
DIP (DOE-UCLA)Q309B1
IntAct (EBI)Q309B1
BioGRIDTRIM16L
STRING (EMBL)TRIM16L
ZODIACTRIM16L
Ontologies - Pathways
QuickGOQ309B1
Ontology : AmiGOcytosol  plasma membrane  
Ontology : EGO-EBIcytosol  plasma membrane  
NDEx NetworkTRIM16L
Atlas of Cancer Signalling NetworkTRIM16L
Wikipedia pathwaysTRIM16L
Orthology - Evolution
OrthoDB147166
GeneTree (enSembl)ENSG00000108448
Phylogenetic Trees/Animal Genes : TreeFamTRIM16L
Homologs : HomoloGeneTRIM16L
Homology/Alignments : Family Browser (UCSC)TRIM16L
Gene fusions - Rearrangements
Fusion : QuiverTRIM16L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM16L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM16L
dbVarTRIM16L
ClinVarTRIM16L
MonarchTRIM16L
1000_GenomesTRIM16L 
Exome Variant ServerTRIM16L
GNOMAD BrowserENSG00000108448
Varsome BrowserTRIM16L
ACMGTRIM16L variants
VarityQ309B1
Genomic Variants (DGV)TRIM16L [DGVbeta]
DECIPHERTRIM16L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM16L 
Mutations
ICGC Data PortalTRIM16L 
TCGA Data PortalTRIM16L 
Broad Tumor PortalTRIM16L
OASIS PortalTRIM16L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM16L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM16L
Mutations and Diseases : HGMDTRIM16L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM16L
DgiDB (Drug Gene Interaction Database)TRIM16L
DoCM (Curated mutations)TRIM16L
CIViC (Clinical Interpretations of Variants in Cancer)TRIM16L
Cancer3DTRIM16L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIM16L
MedgenTRIM16L
Genetic Testing Registry TRIM16L
NextProtQ309B1 [Medical]
GENETestsTRIM16L
Target ValidationTRIM16L
Huge Navigator TRIM16L [HugePedia]
ClinGenTRIM16L
Clinical trials, drugs, therapy
MyCancerGenomeTRIM16L
Protein Interactions : CTDTRIM16L
Pharm GKB GenePA144596249
PharosQ309B1
Clinical trialTRIM16L
Miscellaneous
canSAR (ICR)TRIM16L
HarmonizomeTRIM16L
DataMed IndexTRIM16L
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM16L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:26:53 CEST 2021

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