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TRIM16L (tripartite motif containing 16 like)

Identity

Alias_namestripartite motif-containing 16-like
Alias_symbol (synonym)TRIM70
Other alias
HGNC (Hugo) TRIM16L
LocusID (NCBI) 147166
Atlas_Id 75147
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18722089 and ends at 18736118 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TRIM16L (17p11.2) / METTL21A (2q33.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM16L   32670
Cards
Entrez_Gene (NCBI)TRIM16L  147166  tripartite motif containing 16 like
AliasesTRIM70
GeneCards (Weizmann)TRIM16L
Ensembl hg19 (Hinxton)ENSG00000108448 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108448 [Gene_View]  chr17:18722089-18736118 [Contig_View]  TRIM16L [Vega]
ICGC DataPortalENSG00000108448
TCGA cBioPortalTRIM16L
AceView (NCBI)TRIM16L
Genatlas (Paris)TRIM16L
WikiGenes147166
SOURCE (Princeton)TRIM16L
Genetics Home Reference (NIH)TRIM16L
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM16L  -     chr17:18722089-18736118 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM16L  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblTRIM16L - 17p11.2 [CytoView hg19]  TRIM16L - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBITRIM16L [Mapview hg19]  TRIM16L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK293428 AK298836 AK301639 AK301647 AK316368
RefSeq transcript (Entrez)NM_001037330
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM16L
Cluster EST : UnigeneHs.745311 [ NCBI ]
CGAP (NCI)Hs.745311
Alternative Splicing GalleryENSG00000108448
Gene ExpressionTRIM16L [ NCBI-GEO ]   TRIM16L [ EBI - ARRAY_EXPRESS ]   TRIM16L [ SEEK ]   TRIM16L [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM16L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)147166
GTEX Portal (Tissue expression)TRIM16L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ309B1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ309B1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ309B1
Splice isoforms : SwissVarQ309B1
PhosPhoSitePlusQ309B1
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)   
Domain families : Pfam (NCBI)pfam13765    pfam00622   
Domain families : Smart (EMBL)PRY (SM00589)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM16L
DMDM Disease mutations147166
Blocks (Seattle)TRIM16L
SuperfamilyQ309B1
Human Protein AtlasENSG00000108448
Peptide AtlasQ309B1
HPRD18731
IPIIPI00549368   IPI01009987   IPI00793371   
Protein Interaction databases
DIP (DOE-UCLA)Q309B1
IntAct (EBI)Q309B1
FunCoupENSG00000108448
BioGRIDTRIM16L
STRING (EMBL)TRIM16L
ZODIACTRIM16L
Ontologies - Pathways
QuickGOQ309B1
Ontology : AmiGOcytosol  plasma membrane  
Ontology : EGO-EBIcytosol  plasma membrane  
NDEx NetworkTRIM16L
Atlas of Cancer Signalling NetworkTRIM16L
Wikipedia pathwaysTRIM16L
Orthology - Evolution
OrthoDB147166
GeneTree (enSembl)ENSG00000108448
Phylogenetic Trees/Animal Genes : TreeFamTRIM16L
HOVERGENQ309B1
HOGENOMQ309B1
Homologs : HomoloGeneTRIM16L
Homology/Alignments : Family Browser (UCSC)TRIM16L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM16L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM16L
dbVarTRIM16L
ClinVarTRIM16L
1000_GenomesTRIM16L 
Exome Variant ServerTRIM16L
ExAC (Exome Aggregation Consortium)TRIM16L (select the gene name)
Genetic variants : HAPMAP147166
Genomic Variants (DGV)TRIM16L [DGVbeta]
DECIPHERTRIM16L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM16L 
Mutations
ICGC Data PortalTRIM16L 
TCGA Data PortalTRIM16L 
Broad Tumor PortalTRIM16L
OASIS PortalTRIM16L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM16L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM16L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM16L
DgiDB (Drug Gene Interaction Database)TRIM16L
DoCM (Curated mutations)TRIM16L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM16L (select a term)
intoGenTRIM16L
Cancer3DTRIM16L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenTRIM16L
Genetic Testing Registry TRIM16L
NextProtQ309B1 [Medical]
TSGene147166
GENETestsTRIM16L
Target ValidationTRIM16L
Huge Navigator TRIM16L [HugePedia]
snp3D : Map Gene to Disease147166
BioCentury BCIQTRIM16L
ClinGenTRIM16L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD147166
Chemical/Pharm GKB GenePA144596249
Clinical trialTRIM16L
Miscellaneous
canSAR (ICR)TRIM16L (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM16L
EVEXTRIM16L
GoPubMedTRIM16L
iHOPTRIM16L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:42:30 CEST 2017

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