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TRIM17 (tripartite motif containing 17)

Identity

Alias_namesRNF16
tripartite motif-containing 17
Alias_symbol (synonym)terf
RBCC
Other alias
HGNC (Hugo) TRIM17
LocusID (NCBI) 51127
Atlas_Id 56316
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228407935 and ends at 228416882 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM17   13430
Cards
Entrez_Gene (NCBI)TRIM17  51127  tripartite motif containing 17
AliasesRBCC; RNF16; terf
GeneCards (Weizmann)TRIM17
Ensembl hg19 (Hinxton)ENSG00000162931 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162931 [Gene_View]  chr1:228407935-228416882 [Contig_View]  TRIM17 [Vega]
ICGC DataPortalENSG00000162931
TCGA cBioPortalTRIM17
AceView (NCBI)TRIM17
Genatlas (Paris)TRIM17
WikiGenes51127
SOURCE (Princeton)TRIM17
Genetics Home Reference (NIH)TRIM17
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM17  -     chr1:228407935-228416882 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM17  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblTRIM17 - 1q42.13 [CytoView hg19]  TRIM17 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBITRIM17 [Mapview hg19]  TRIM17 [Mapview hg38]
OMIM606123   
Gene and transcription
Genbank (Entrez)AF156271 AK055426 AK301105 AK308774 AK316379
RefSeq transcript (Entrez)NM_001024940 NM_001024941 NM_001134855 NM_016102
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM17
Cluster EST : UnigeneHs.121748 [ NCBI ]
CGAP (NCI)Hs.121748
Alternative Splicing GalleryENSG00000162931
Gene ExpressionTRIM17 [ NCBI-GEO ]   TRIM17 [ EBI - ARRAY_EXPRESS ]   TRIM17 [ SEEK ]   TRIM17 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51127
GTEX Portal (Tissue expression)TRIM17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y577   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y577  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y577
Splice isoforms : SwissVarQ9Y577
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusQ9Y577
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_dom    PRY    SPRY_dom    TRIM17    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM17
DMDM Disease mutations51127
Blocks (Seattle)TRIM17
SuperfamilyQ9Y577
Human Protein AtlasENSG00000162931
Peptide AtlasQ9Y577
HPRD05839
IPIIPI00479218   IPI00913955   IPI00976885   IPI00973261   IPI00973088   IPI00975887   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y577
IntAct (EBI)Q9Y577
FunCoupENSG00000162931
BioGRIDTRIM17
STRING (EMBL)TRIM17
ZODIACTRIM17
Ontologies - Pathways
QuickGOQ9Y577
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  cellular_component  intracellular  autophagy  zinc ion binding  protein binding, bridging  regulation of protein localization  protein autoubiquitination  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  cellular_component  intracellular  autophagy  zinc ion binding  protein binding, bridging  regulation of protein localization  protein autoubiquitination  
NDEx NetworkTRIM17
Atlas of Cancer Signalling NetworkTRIM17
Wikipedia pathwaysTRIM17
Orthology - Evolution
OrthoDB51127
GeneTree (enSembl)ENSG00000162931
Phylogenetic Trees/Animal Genes : TreeFamTRIM17
HOVERGENQ9Y577
HOGENOMQ9Y577
Homologs : HomoloGeneTRIM17
Homology/Alignments : Family Browser (UCSC)TRIM17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM17
dbVarTRIM17
ClinVarTRIM17
1000_GenomesTRIM17 
Exome Variant ServerTRIM17
ExAC (Exome Aggregation Consortium)TRIM17 (select the gene name)
Genetic variants : HAPMAP51127
Genomic Variants (DGV)TRIM17 [DGVbeta]
DECIPHERTRIM17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM17 
Mutations
ICGC Data PortalTRIM17 
TCGA Data PortalTRIM17 
Broad Tumor PortalTRIM17
OASIS PortalTRIM17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM17
DgiDB (Drug Gene Interaction Database)TRIM17
DoCM (Curated mutations)TRIM17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM17 (select a term)
intoGenTRIM17
Cancer3DTRIM17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606123   
Orphanet
MedgenTRIM17
Genetic Testing Registry TRIM17
NextProtQ9Y577 [Medical]
TSGene51127
GENETestsTRIM17
Target ValidationTRIM17
Huge Navigator TRIM17 [HugePedia]
snp3D : Map Gene to Disease51127
BioCentury BCIQTRIM17
ClinGenTRIM17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51127
Chemical/Pharm GKB GenePA37768
Clinical trialTRIM17
Miscellaneous
canSAR (ICR)TRIM17 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM17
EVEXTRIM17
GoPubMedTRIM17
iHOPTRIM17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 14:10:28 CEST 2017

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