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TRIM17 (tripartite motif containing 17)

Identity

Alias (NCBI)RBCC
RNF16
terf
HGNC (Hugo) TRIM17
HGNC Alias symbterf
RBCC
HGNC Alias namering finger protein 16
 RING finger protein terf
 testis RING finger protein
HGNC Previous nameRNF16
HGNC Previous nametripartite motif-containing 17
LocusID (NCBI) 51127
Atlas_Id 56316
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228407935 and ends at 228416861 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM17   13430
Cards
Entrez_Gene (NCBI)TRIM17    tripartite motif containing 17
AliasesRBCC; RNF16; terf
GeneCards (Weizmann)TRIM17
Ensembl hg19 (Hinxton)ENSG00000162931 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162931 [Gene_View]  ENSG00000162931 [Sequence]  chr1:228407935-228416861 [Contig_View]  TRIM17 [Vega]
ICGC DataPortalENSG00000162931
TCGA cBioPortalTRIM17
AceView (NCBI)TRIM17
Genatlas (Paris)TRIM17
SOURCE (Princeton)TRIM17
Genetics Home Reference (NIH)TRIM17
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM17  -     chr1:228407935-228416861 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM17  -     1q42.13   [Description]    (hg19-Feb_2009)
GoldenPathTRIM17 - 1q42.13 [CytoView hg19]  TRIM17 - 1q42.13 [CytoView hg38]
ImmunoBaseENSG00000162931
Genome Data Viewer NCBITRIM17 [Mapview hg19]  
OMIM606123   
Gene and transcription
Genbank (Entrez)AF156271 AK055426 AK301105 AK308774 AK316379
RefSeq transcript (Entrez)NM_001024940 NM_001024941 NM_001134855 NM_016102
Consensus coding sequences : CCDS (NCBI)TRIM17
Gene ExpressionTRIM17 [ NCBI-GEO ]   TRIM17 [ EBI - ARRAY_EXPRESS ]   TRIM17 [ SEEK ]   TRIM17 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM17 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM17 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51127
GTEX Portal (Tissue expression)TRIM17
Human Protein AtlasENSG00000162931-TRIM17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y577   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y577  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y577
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9Y577
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Butyrophylin_SPRY    ConA-like_dom_sf    PRY    SPRY_dom    TRIM17    TRIM17_PRY/SPRY    Znf-RING_LisH    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam00622    pfam00643    pfam13445   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM17
SuperfamilyQ9Y577
AlphaFold pdb e-kbQ9Y577   
Human Protein Atlas [tissue]ENSG00000162931-TRIM17 [tissue]
HPRD05839
Protein Interaction databases
DIP (DOE-UCLA)Q9Y577
IntAct (EBI)Q9Y577
BioGRIDTRIM17
STRING (EMBL)TRIM17
ZODIACTRIM17
Ontologies - Pathways
QuickGOQ9Y577
Ontology : AmiGOubiquitin-protein transferase activity  protein binding  cellular_component  cytoplasm  autophagy  zinc ion binding  regulation of gene expression  protein ubiquitination  protein-macromolecule adaptor activity  regulation of protein localization  innate immune response  protein autoubiquitination  ubiquitin protein ligase activity  
Ontology : EGO-EBIubiquitin-protein transferase activity  protein binding  cellular_component  cytoplasm  autophagy  zinc ion binding  regulation of gene expression  protein ubiquitination  protein-macromolecule adaptor activity  regulation of protein localization  innate immune response  protein autoubiquitination  ubiquitin protein ligase activity  
NDEx NetworkTRIM17
Atlas of Cancer Signalling NetworkTRIM17
Wikipedia pathwaysTRIM17
Orthology - Evolution
OrthoDB51127
GeneTree (enSembl)ENSG00000162931
Phylogenetic Trees/Animal Genes : TreeFamTRIM17
Homologs : HomoloGeneTRIM17
Homology/Alignments : Family Browser (UCSC)TRIM17
Gene fusions - Rearrangements
Fusion : QuiverTRIM17
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM17
dbVarTRIM17
ClinVarTRIM17
MonarchTRIM17
1000_GenomesTRIM17 
Exome Variant ServerTRIM17
GNOMAD BrowserENSG00000162931
Varsome BrowserTRIM17
ACMGTRIM17 variants
VarityQ9Y577
Genomic Variants (DGV)TRIM17 [DGVbeta]
DECIPHERTRIM17 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM17 
Mutations
ICGC Data PortalTRIM17 
TCGA Data PortalTRIM17 
Broad Tumor PortalTRIM17
OASIS PortalTRIM17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM17  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM17
Mutations and Diseases : HGMDTRIM17
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM17
DgiDB (Drug Gene Interaction Database)TRIM17
DoCM (Curated mutations)TRIM17
CIViC (Clinical Interpretations of Variants in Cancer)TRIM17
Cancer3DTRIM17
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606123   
Orphanet
DisGeNETTRIM17
MedgenTRIM17
Genetic Testing Registry TRIM17
NextProtQ9Y577 [Medical]
GENETestsTRIM17
Target ValidationTRIM17
Huge Navigator TRIM17 [HugePedia]
ClinGenTRIM17
Clinical trials, drugs, therapy
MyCancerGenomeTRIM17
Protein Interactions : CTDTRIM17
Pharm GKB GenePA37768
PharosQ9Y577
Clinical trialTRIM17
Miscellaneous
canSAR (ICR)TRIM17
HarmonizomeTRIM17
DataMed IndexTRIM17
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:36:18 CEST 2021

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