Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TRIM22 (tripartite motif containing 22)

Identity

Other namesGPSTAF50
RNF94
STAF50
HGNC (Hugo) TRIM22
LocusID (NCBI) 10346
Location 11p15.4
Location_base_pair Starts at 5710817 and ends at 5732093 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)TRIM22   16379
Entrez_Gene (NCBI)TRIM22  10346  tripartite motif containing 22
Cards
GeneCards (Weizmann)TRIM22
Ensembl (Hinxton)ENSG00000132274 [Gene_View]  chr11:5710817-5732093 [Contig_View]  TRIM22 [Vega]
AceView (NCBI)TRIM22
Genatlas (Paris)TRIM22
SOURCE (Stanford)NM_001199573 NM_006074
Genomic and cartography
GoldenPath (UCSC)TRIM22  -  11p15.4   chr11:5710817-5732093 +  11p15.4   [Description]    (hg19-Feb_2009)
EnsemblTRIM22 - 11p15.4 [CytoView]
Mapping of homologs : NCBITRIM22 [Mapview]
OMIM606559   
Gene and transcription
Genbank (Entrez)AK290434 AK298715 AK298934 AK301192 AK308221
RefSeq transcript (SRS)NM_001199573 NM_006074
RefSeq transcript (Entrez)NM_001199573 NM_006074
RefSeq genomic (SRS)AC_000143 NC_000011 NC_018922 NT_009237 NW_001838021 NW_004078070
RefSeq genomic (Entrez)AC_000143 NC_000011 NC_018922 NT_009237 NW_001838021 NW_004078070
Consensus coding sequences : CCDS (NCBI)TRIM22
Cluster EST : UnigeneHs.733231 [ SRS ] Hs.733231 [ NCBI ]
CGAP (NCI)Hs.733231
Alternative Splicing : Fast-db (Paris)GSHG0004586
Alternative Splicing GalleryENSG00000132274
Gene ExpressionTRIM22 [ NCBI-GEO ]   TRIM22 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IYM9 (SRS) Q8IYM9 (Uniprot)
NextProtQ8IYM9
With graphics : InterProQ8IYM9
Splice isoforms : SwissVarQ8IYM9(Swissvar)
Domaine pattern : Prosite (SRS)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)B30.2/SPRY    Butyrophylin    ConA-like_lec_gl_sf    SPRY_rcpt    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_lec_gl_sf    SPRY_rcpt    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Related proteins : CluSTrQ8IYM9
Domain families : Pfam (SRS)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  RING (SM00184)  
DMDM10346
Blocks (Seattle)Q8IYM9
Human Protein AtlasENSG00000132274
HPRD05951
IPIIPI00477812   IPI00477398   IPI00942007   IPI00748802   IPI00239700   IPI00884241   IPI00657693   IPI00893225   IPI00927497   IPI00927753   IPI00924480   
Protein Interaction databases
DIP (DOE-UCLA)Q8IYM9
IntAct (EBI)Q8IYM9
FunCoupENSG00000132274
REACTOMETRIM22
Protein Interaction Database10346
BioGRIDTRIM22
InParanoidQ8IYM9
Interologous Interaction database Q8IYM9
IntegromeDBTRIM22
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TRIM22
SNP (GeneSNP Utah)TRIM22
SNP : HGBaseTRIM22
Genetic variants : HAPMAPTRIM22
Somatic Mutations in Cancer : COSMICTRIM22 
CONAN: Copy Number AnalysisTRIM22 
Mutations and Diseases : HGMDTRIM22
OMIM606559   
GENETests606559   
Disease Genetic AssociationTRIM22
Huge Navigator TRIM22 [HugePedia]  TRIM22 [HugeCancerGEM]
Genomic VariantsTRIM22  TRIM22 [DGVbeta]
snp3D : Map Gene to Disease10346
General knowledge
Homologs : HomoloGeneTRIM22
Homology/Alignments : Family Browser (UCSC)TRIM22
Phylogenetic Trees/Animal Genes : TreeFamTRIM22
Catalytic activity : Enzyme6.3.2.- [ Enzyme-Expasy ]   6.3.2.- [ Enzyme-SRS ]   6.3.2.- [ IntEnz-EBI ]   6.3.2.- [ BRENDA ]   6.3.2.- [ KEGG ]   
Chemical/Protein Interactions : CTD10346
Chemical/Pharm GKB GenePA38129
Clinical trialTRIM22
Cancer Resource (Charite)ENSG00000132274
Ontology : AmiGOsequence-specific DNA binding transcription factor activity  transcription corepressor activity  nucleus  cytoplasm  Golgi apparatus  transcription, DNA-dependent  regulation of transcription, DNA-dependent  immune response  zinc ion binding  response to virus  Cajal body  protein ubiquitination  nuclear speck  ligase activity  virus-host interaction  intracellular membrane-bounded organelle  metal ion binding  defense response to virus  protein trimerization  
Ontology : EGO-EBIsequence-specific DNA binding transcription factor activity  transcription corepressor activity  nucleus  cytoplasm  Golgi apparatus  transcription, DNA-dependent  regulation of transcription, DNA-dependent  immune response  zinc ion binding  response to virus  Cajal body  protein ubiquitination  nuclear speck  ligase activity  virus-host interaction  intracellular membrane-bounded organelle  metal ion binding  defense response to virus  protein trimerization  
Other databases
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
PubGeneTRIM22
iHOPTRIM22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:28:52 CEST 2013
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