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TRIM23 (tripartite motif containing 23)

Identity

Alias_namesARFD1
ADP-ribosylation factor domain protein 1, 64kDa
tripartite motif-containing 23
Alias_symbol (synonym)ARD1
RNF46
Other alias
HGNC (Hugo) TRIM23
LocusID (NCBI) 373
Atlas_Id 53772
Location 5q12.3  [Link to chromosome band 5q12]
Location_base_pair Starts at 65589680 and ends at 65624360 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM23   660
Cards
Entrez_Gene (NCBI)TRIM23  373  tripartite motif containing 23
AliasesARD1; ARFD1; RNF46
GeneCards (Weizmann)TRIM23
Ensembl hg19 (Hinxton)ENSG00000113595 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113595 [Gene_View]  chr5:65589680-65624360 [Contig_View]  TRIM23 [Vega]
ICGC DataPortalENSG00000113595
TCGA cBioPortalTRIM23
AceView (NCBI)TRIM23
Genatlas (Paris)TRIM23
WikiGenes373
SOURCE (Princeton)TRIM23
Genetics Home Reference (NIH)TRIM23
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM23  -     chr5:65589680-65624360 -  5q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM23  -     5q12.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM23 - 5q12.3 [CytoView hg19]  TRIM23 - 5q12.3 [CytoView hg38]
Mapping of homologs : NCBITRIM23 [Mapview hg19]  TRIM23 [Mapview hg38]
OMIM601747   
Gene and transcription
Genbank (Entrez)AF230397 AF230398 AF230399 AI679928 AK292814
RefSeq transcript (Entrez)NM_001656 NM_033227 NM_033228
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM23
Cluster EST : UnigeneHs.792 [ NCBI ]
CGAP (NCI)Hs.792
Alternative Splicing GalleryENSG00000113595
Gene ExpressionTRIM23 [ NCBI-GEO ]   TRIM23 [ EBI - ARRAY_EXPRESS ]   TRIM23 [ SEEK ]   TRIM23 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)373
GTEX Portal (Tissue expression)TRIM23
Protein : pattern, domain, 3D structure
UniProt/SwissProtP36406   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP36406  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP36406
Splice isoforms : SwissVarP36406
Catalytic activity : Enzyme2.3.2.27 [ Enzyme-Expasy ]   2.3.2.272.3.2.27 [ IntEnz-EBI ]   2.3.2.27 [ BRENDA ]   2.3.2.27 [ KEGG ]   
PhosPhoSitePlusP36406
Domaine pattern : Prosite (Expaxy)ARF (PS51417)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)Bbox_C    P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR    Znf_B-box    Znf_C2H2    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)Arf (PF00025)    zf-B_box (PF00643)    zf-RING_5 (PF14634)   
Domain families : Pfam (NCBI)pfam00025    pfam00643    pfam14634   
Domain families : Smart (EMBL)BBC (SM00502)  BBOX (SM00336)  RING (SM00184)  
Conserved Domain (NCBI)TRIM23
DMDM Disease mutations373
Blocks (Seattle)TRIM23
SuperfamilyP36406
Human Protein AtlasENSG00000113595
Peptide AtlasP36406
HPRD03449
IPIIPI00003328   IPI00220244   IPI00018593   IPI00967012   IPI00965267   IPI00965071   
Protein Interaction databases
DIP (DOE-UCLA)P36406
IntAct (EBI)P36406
FunCoupENSG00000113595
BioGRIDTRIM23
STRING (EMBL)TRIM23
ZODIACTRIM23
Ontologies - Pathways
QuickGOP36406
Ontology : AmiGOGolgi membrane  nucleic acid binding  GTPase activity  ubiquitin-protein transferase activity  protein binding  GTP binding  nucleus  lysosome  lysosomal membrane  small GTPase mediated signal transduction  enzyme activator activity  zinc ion binding  viral process  protein ubiquitination  protein ubiquitination  GDP binding  identical protein binding  positive regulation of catalytic activity  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  nucleic acid binding  GTPase activity  ubiquitin-protein transferase activity  protein binding  GTP binding  nucleus  lysosome  lysosomal membrane  small GTPase mediated signal transduction  enzyme activator activity  zinc ion binding  viral process  protein ubiquitination  protein ubiquitination  GDP binding  identical protein binding  positive regulation of catalytic activity  extracellular exosome  
NDEx NetworkTRIM23
Atlas of Cancer Signalling NetworkTRIM23
Wikipedia pathwaysTRIM23
Orthology - Evolution
OrthoDB373
GeneTree (enSembl)ENSG00000113595
Phylogenetic Trees/Animal Genes : TreeFamTRIM23
HOVERGENP36406
HOGENOMP36406
Homologs : HomoloGeneTRIM23
Homology/Alignments : Family Browser (UCSC)TRIM23
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM23
dbVarTRIM23
ClinVarTRIM23
1000_GenomesTRIM23 
Exome Variant ServerTRIM23
ExAC (Exome Aggregation Consortium)TRIM23 (select the gene name)
Genetic variants : HAPMAP373
Genomic Variants (DGV)TRIM23 [DGVbeta]
DECIPHERTRIM23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM23 
Mutations
ICGC Data PortalTRIM23 
TCGA Data PortalTRIM23 
Broad Tumor PortalTRIM23
OASIS PortalTRIM23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM23  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM23
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM23
DgiDB (Drug Gene Interaction Database)TRIM23
DoCM (Curated mutations)TRIM23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM23 (select a term)
intoGenTRIM23
Cancer3DTRIM23(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601747   
Orphanet
MedgenTRIM23
Genetic Testing Registry TRIM23
NextProtP36406 [Medical]
TSGene373
GENETestsTRIM23
Target ValidationTRIM23
Huge Navigator TRIM23 [HugePedia]
snp3D : Map Gene to Disease373
BioCentury BCIQTRIM23
ClinGenTRIM23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD373
Chemical/Pharm GKB GenePA24943
Clinical trialTRIM23
Miscellaneous
canSAR (ICR)TRIM23 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM23
EVEXTRIM23
GoPubMedTRIM23
iHOPTRIM23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:00:49 CEST 2017

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