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TRIM26 (tripartite motif containing 26)

Identity

Other namesAFP
RNF95
ZNF173
HGNC (Hugo) TRIM26
LocusID (NCBI) 7726
Location 6p22.1
Location_base_pair Starts at 30152232 and ends at 30181271 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRIM26   12962
Cards
Entrez_Gene (NCBI)TRIM26  7726  tripartite motif containing 26
GeneCards (Weizmann)TRIM26
Ensembl (Hinxton)ENSG00000234127 [Gene_View]  chr6:30152232-30181271 [Contig_View]  TRIM26 [Vega]
ICGC DataPortalENSG00000234127
cBioPortalTRIM26
AceView (NCBI)TRIM26
Genatlas (Paris)TRIM26
WikiGenes7726
SOURCE (Princeton)NM_001242783 NM_003449
Genomic and cartography
GoldenPath (UCSC)TRIM26  -  6p22.1   chr6:30152232-30181271 -  6p22.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM26 - 6p22.1 [CytoView]
Mapping of homologs : NCBITRIM26 [Mapview]
OMIM600830   
Gene and transcription
Genbank (Entrez)AK096996 AK122859 AK314782 BC021115 BC024039
RefSeq transcript (Entrez)NM_001242783 NM_003449
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_007592 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NW_001838980 NW_004929326
Consensus coding sequences : CCDS (NCBI)TRIM26
Cluster EST : UnigeneHs.731863 [ NCBI ]
CGAP (NCI)Hs.731863
Alternative Splicing : Fast-db (Paris)GSHG0026438
Alternative Splicing GalleryENSG00000234127
Gene ExpressionTRIM26 [ NCBI-GEO ]     TRIM26 [ SEEK ]   TRIM26 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12899 (Uniprot)
NextProtQ12899  [Medical]
With graphics : InterProQ12899
Splice isoforms : SwissVarQ12899 (Swissvar)
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY [organisation]   Butyrophylin [organisation]   ConA-like_lec_gl_sf [organisation]   PRY [organisation]   SPla/RYanodine_receptor_subgr [organisation]   SPRY_rcpt [organisation]   Znf_B-box [organisation]   Znf_RING [organisation]   Znf_RING/FYVE/PHD [organisation]  
Related proteins : CluSTrQ12899
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
DMDM Disease mutations7726
Blocks (Seattle)Q12899
Human Protein AtlasENSG00000234127 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ12899
HPRD02901
IPIIPI00010948   IPI00647769   IPI00790584   IPI00642517   IPI00798036   
Protein Interaction databases
DIP (DOE-UCLA)Q12899
IntAct (EBI)Q12899
FunCoupENSG00000234127
BioGRIDTRIM26
InParanoidQ12899
Interologous Interaction database Q12899
IntegromeDBTRIM26
STRING (EMBL)TRIM26
Ontologies - Pathways
Ontology : AmiGODNA binding  cellular_component  cytoplasm  zinc ion binding  innate immune response  negative regulation of viral entry into host cell  metal ion binding  positive regulation of sequence-specific DNA binding transcription factor activity  negative regulation of viral release from host cell  
Ontology : EGO-EBIDNA binding  cellular_component  cytoplasm  zinc ion binding  innate immune response  negative regulation of viral entry into host cell  metal ion binding  positive regulation of sequence-specific DNA binding transcription factor activity  negative regulation of viral release from host cell  
Protein Interaction DatabaseTRIM26
Wikipedia pathwaysTRIM26
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TRIM26
snp3D : Map Gene to Disease7726
SNP (GeneSNP Utah)TRIM26
SNP : HGBaseTRIM26
Genetic variants : HAPMAPTRIM26
Exome VariantTRIM26
1000_GenomesTRIM26 
ICGC programENSG00000234127 
Somatic Mutations in Cancer : COSMICTRIM26 
CONAN: Copy Number AnalysisTRIM26 
Mutations and Diseases : HGMDTRIM26
Genomic VariantsTRIM26  TRIM26 [DGVbeta]
dbVarTRIM26
ClinVarTRIM26
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM600830   
MedgenTRIM26
GENETestsTRIM26
Disease Genetic AssociationTRIM26
Huge Navigator TRIM26 [HugePedia]  TRIM26 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneTRIM26
Homology/Alignments : Family Browser (UCSC)TRIM26
Phylogenetic Trees/Animal Genes : TreeFamTRIM26
Chemical/Protein Interactions : CTD7726
Chemical/Pharm GKB GenePA37544
Clinical trialTRIM26
Cancer Resource (Charite)ENSG00000234127
Other databases
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
CoreMineTRIM26
iHOPTRIM26
OncoSearchTRIM26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Jul 26 14:50:55 CEST 2014

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