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TRIM26 (tripartite motif containing 26)

Identity

Other namesAFP
RNF95
ZNF173
HGNC (Hugo) TRIM26
LocusID (NCBI) 7726
Location 6p22.1
Location_base_pair Starts at 30152232 and ends at 30181271 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRIM26   12962
Entrez_Gene (NCBI)TRIM26  7726  tripartite motif containing 26
Cards
GeneCards (Weizmann)TRIM26
Ensembl (Hinxton)ENSG00000234127 [Gene_View]  chr6:30152232-30181271 [Contig_View]  TRIM26 [Vega]
AceView (NCBI)TRIM26
Genatlas (Paris)TRIM26
SOURCE (Stanford)NM_001242783 NM_003449
Genomic and cartography
GoldenPath (UCSC)TRIM26  -  6p22.1   chr6:30152232-30181271 -  6p22.1   [Description]    (hg19-Feb_2009)
EnsemblTRIM26 - 6p22.1 [CytoView]
Mapping of homologs : NCBITRIM26 [Mapview]
OMIM600830   
Gene and transcription
Genbank (Entrez)AK096996 AK122859 AK314782 BC021115 BC024039
RefSeq transcript (SRS)NM_001242783 NM_003449
RefSeq transcript (Entrez)NM_001242783 NM_003449
RefSeq genomic (SRS)AC_000138 NC_000006 NC_018917 NT_007592 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NW_001838980 NW_004078026
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_007592 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249 NW_001838980 NW_004078026
Consensus coding sequences : CCDS (NCBI)TRIM26
Cluster EST : UnigeneHs.731863 [ SRS ] Hs.731863 [ NCBI ]
CGAP (NCI)Hs.731863
Alternative Splicing : Fast-db (Paris)GSHG0026438
Alternative Splicing GalleryENSG00000234127
Gene ExpressionTRIM26 [ NCBI-GEO ]   TRIM26 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12899 (SRS) Q12899 (Uniprot)
NextProtQ12899
With graphics : InterProQ12899
Splice isoforms : SwissVarQ12899(Swissvar)
Domaine pattern : Prosite (SRS)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)B30.2/SPRY    Butyrophylin    ConA-like_lec_gl_sf    PRY    SPla/RYanodine_receptor_subgr    SPRY_rcpt    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD   
Domains : Interpro (EBI)B30.2/SPRY    Butyrophylin    ConA-like_lec_gl_sf    PRY    SPla/RYanodine_receptor_subgr    SPRY_rcpt    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD   
Related proteins : CluSTrQ12899
Domain families : Pfam (SRS)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (Sanger)SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
DMDM7726
Blocks (Seattle)Q12899
Human Protein AtlasENSG00000234127
HPRD02901
IPIIPI00010948   IPI00647769   IPI00790584   IPI00642517   IPI00798036   
Protein Interaction databases
DIP (DOE-UCLA)Q12899
IntAct (EBI)Q12899
FunCoupENSG00000234127
REACTOMETRIM26
Protein Interaction Database7726
BioGRIDTRIM26
InParanoidQ12899
Interologous Interaction database Q12899
IntegromeDBTRIM26
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TRIM26
SNP (GeneSNP Utah)TRIM26
SNP : HGBaseTRIM26
Genetic variants : HAPMAPTRIM26
Somatic Mutations in Cancer : COSMICTRIM26 
CONAN: Copy Number AnalysisTRIM26 
Mutations and Diseases : HGMDTRIM26
OMIM600830   
GENETests600830   
Disease Genetic AssociationTRIM26
Huge Navigator TRIM26 [HugePedia]  TRIM26 [HugeCancerGEM]
Genomic VariantsTRIM26  TRIM26 [DGVbeta]
snp3D : Map Gene to Disease7726
General knowledge
Homologs : HomoloGeneTRIM26
Homology/Alignments : Family Browser (UCSC)TRIM26
Phylogenetic Trees/Animal Genes : TreeFamTRIM26
Chemical/Protein Interactions : CTD7726
Chemical/Pharm GKB GenePA37544
Clinical trialTRIM26
Cancer Resource (Charite)ENSG00000234127
Ontology : AmiGODNA binding  cellular_component  cytoplasm  biological_process  zinc ion binding  metal ion binding  
Ontology : EGO-EBIDNA binding  cellular_component  cytoplasm  biological_process  zinc ion binding  metal ion binding  
Other databases
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
PubGeneTRIM26
iHOPTRIM26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:28:59 CEST 2013
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