Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRIM26 (tripartite motif containing 26)

Identity

Alias (NCBI)AFP
RNF95
ZNF173
HGNC (Hugo) TRIM26
HGNC Alias symbRNF95
HGNC Previous nameZNF173
HGNC Previous nametripartite motif-containing 26
LocusID (NCBI) 7726
Atlas_Id 42699
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30184455 and ends at 30213406 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM26 (6p22.1) / PSMD1 (2q37.1)TRIM26 (6p22.1) / TJAP1 (6p21.1)TRIM26 (6p22.1) / TRIM26 (6p22.1)
TRIM26 6p22.1 / TJAP1 6p21.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)TRIM26   12962
Cards
Entrez_Gene (NCBI)TRIM26    tripartite motif containing 26
AliasesAFP; RNF95; ZNF173
GeneCards (Weizmann)TRIM26
Ensembl hg19 (Hinxton)ENSG00000234127 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000234127 [Gene_View]  ENSG00000234127 [Sequence]  chr6:30184455-30213406 [Contig_View]  TRIM26 [Vega]
ICGC DataPortalENSG00000234127
TCGA cBioPortalTRIM26
AceView (NCBI)TRIM26
Genatlas (Paris)TRIM26
SOURCE (Princeton)TRIM26
Genetics Home Reference (NIH)TRIM26
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM26  -     chr6:30184455-30213406 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM26  -     6p22.1   [Description]    (hg19-Feb_2009)
GoldenPathTRIM26 - 6p22.1 [CytoView hg19]  TRIM26 - 6p22.1 [CytoView hg38]
ImmunoBaseENSG00000234127
Genome Data Viewer NCBITRIM26 [Mapview hg19]  
OMIM600830   
Gene and transcription
Genbank (Entrez)AK096996 AK122859 AK314782 BC021115 BC024039
RefSeq transcript (Entrez)NM_001242783 NM_003449
Consensus coding sequences : CCDS (NCBI)TRIM26
Gene ExpressionTRIM26 [ NCBI-GEO ]   TRIM26 [ EBI - ARRAY_EXPRESS ]   TRIM26 [ SEEK ]   TRIM26 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM26 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM26 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7726
GTEX Portal (Tissue expression)TRIM26
Human Protein AtlasENSG00000234127-TRIM26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12899   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12899  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12899
PhosPhoSitePlusQ12899
Domaine pattern : Prosite (Expaxy)B302_SPRY (PS50188)    ZF_BBOX (PS50119)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)B30.2/SPRY    B30.2/SPRY_sf    Butyrophylin_SPRY    ConA-like_dom_sf    PRY    SPRY_dom    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)PRY (PF13765)    SPRY (PF00622)    zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam13765    pfam00622    pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  PRY (SM00589)  RING (SM00184)  SPRY (SM00449)  
Conserved Domain (NCBI)TRIM26
SuperfamilyQ12899
AlphaFold pdb e-kbQ12899   
Human Protein Atlas [tissue]ENSG00000234127-TRIM26 [tissue]
HPRD02901
Protein Interaction databases
DIP (DOE-UCLA)Q12899
IntAct (EBI)Q12899
BioGRIDTRIM26
STRING (EMBL)TRIM26
ZODIACTRIM26
Ontologies - Pathways
QuickGOQ12899
Ontology : AmiGODNA binding  protein binding  cellular_component  nucleus  cytoplasm  cytosol  zinc ion binding  regulation of gene expression  protein ubiquitination  innate immune response  innate immune response  negative regulation of viral entry into host cell  metal ion binding  positive regulation of DNA-binding transcription factor activity  positive regulation of DNA-binding transcription factor activity  interferon-gamma-mediated signaling pathway  ubiquitin protein ligase activity  negative regulation of viral release from host cell  
Ontology : EGO-EBIDNA binding  protein binding  cellular_component  nucleus  cytoplasm  cytosol  zinc ion binding  regulation of gene expression  protein ubiquitination  innate immune response  innate immune response  negative regulation of viral entry into host cell  metal ion binding  positive regulation of DNA-binding transcription factor activity  positive regulation of DNA-binding transcription factor activity  interferon-gamma-mediated signaling pathway  ubiquitin protein ligase activity  negative regulation of viral release from host cell  
NDEx NetworkTRIM26
Atlas of Cancer Signalling NetworkTRIM26
Wikipedia pathwaysTRIM26
Orthology - Evolution
OrthoDB7726
GeneTree (enSembl)ENSG00000234127
Phylogenetic Trees/Animal Genes : TreeFamTRIM26
Homologs : HomoloGeneTRIM26
Homology/Alignments : Family Browser (UCSC)TRIM26
Gene fusions - Rearrangements
Fusion : MitelmanTRIM26/TJAP1 [6p22.1/6p21.1]  
Fusion : QuiverTRIM26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM26 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM26
dbVarTRIM26
ClinVarTRIM26
MonarchTRIM26
1000_GenomesTRIM26 
Exome Variant ServerTRIM26
GNOMAD BrowserENSG00000234127
Varsome BrowserTRIM26
ACMGTRIM26 variants
VarityQ12899
Genomic Variants (DGV)TRIM26 [DGVbeta]
DECIPHERTRIM26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM26 
Mutations
ICGC Data PortalTRIM26 
TCGA Data PortalTRIM26 
Broad Tumor PortalTRIM26
OASIS PortalTRIM26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM26  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRIM26
Mutations and Diseases : HGMDTRIM26
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaTRIM26
DgiDB (Drug Gene Interaction Database)TRIM26
DoCM (Curated mutations)TRIM26
CIViC (Clinical Interpretations of Variants in Cancer)TRIM26
Cancer3DTRIM26
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600830   
Orphanet
DisGeNETTRIM26
MedgenTRIM26
Genetic Testing Registry TRIM26
NextProtQ12899 [Medical]
GENETestsTRIM26
Target ValidationTRIM26
Huge Navigator TRIM26 [HugePedia]
ClinGenTRIM26
Clinical trials, drugs, therapy
MyCancerGenomeTRIM26
Protein Interactions : CTDTRIM26
Pharm GKB GenePA37544
PharosQ12899
Clinical trialTRIM26
Miscellaneous
canSAR (ICR)TRIM26
HarmonizomeTRIM26
DataMed IndexTRIM26
Probes
Litterature
PubMed79 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXTRIM26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:36:19 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.