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TRIM28 (tripartite motif containing 28)

Identity

Alias_namestripartite motif-containing 28
Alias_symbol (synonym)TIF1B
KAP1
TF1B
RNF96
PPP1R157
Other alias
HGNC (Hugo) TRIM28
LocusID (NCBI) 10155
Atlas_Id 42700
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 58544469 and ends at 58550715 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAPZA2 (7q31.2) / TRIM28 (19q13.43)SNRPF (12q23.1) / TRIM28 (19q13.43)TRIM28 (19q13.43) / TRIM28 (19q13.43)
TRIM28 (19q13.43) / ZBTB45 (19q13.43)TRIM28 19q13.43 / ZBTB45 19q13.43

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias TL_t0719q31q13ID2574


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t1919q13q13ID103419


External links

Nomenclature
HGNC (Hugo)TRIM28   16384
Cards
Entrez_Gene (NCBI)TRIM28  10155  tripartite motif containing 28
AliasesKAP1; PPP1R157; RNF96; TF1B; 
TIF1B
GeneCards (Weizmann)TRIM28
Ensembl hg19 (Hinxton)ENSG00000130726 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000130726 [Gene_View]  ENSG00000130726 [Sequence]  chr19:58544469-58550715 [Contig_View]  TRIM28 [Vega]
ICGC DataPortalENSG00000130726
TCGA cBioPortalTRIM28
AceView (NCBI)TRIM28
Genatlas (Paris)TRIM28
WikiGenes10155
SOURCE (Princeton)TRIM28
Genetics Home Reference (NIH)TRIM28
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM28  -     chr19:58544469-58550715 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM28  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathTRIM28 - 19q13.43 [CytoView hg19]  TRIM28 - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000130726
Mapping of homologs : NCBITRIM28 [Mapview hg19]  TRIM28 [Mapview hg38]
OMIM601742   
Gene and transcription
Genbank (Entrez)AK131063 AK225760 AK313478 AL360114 AL360188
RefSeq transcript (Entrez)NM_005762
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM28
Alternative Splicing GalleryENSG00000130726
Gene ExpressionTRIM28 [ NCBI-GEO ]   TRIM28 [ EBI - ARRAY_EXPRESS ]   TRIM28 [ SEEK ]   TRIM28 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10155
GTEX Portal (Tissue expression)TRIM28
Human Protein AtlasENSG00000130726-TRIM28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIM28
DMDM Disease mutations10155
Blocks (Seattle)TRIM28
Human Protein Atlas [tissue]ENSG00000130726-TRIM28 [tissue]
HPRD03445
IPIIPI00438229   IPI00438230   
Protein Interaction databases
FunCoupENSG00000130726
BioGRIDTRIM28
STRING (EMBL)TRIM28
ZODIACTRIM28
Ontologies - Pathways
Huge Navigator TRIM28 [HugePedia]
snp3D : Map Gene to Disease10155
BioCentury BCIQTRIM28
ClinGenTRIM28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10155
Chemical/Pharm GKB GenePA38131
Clinical trialTRIM28
Miscellaneous
canSAR (ICR)TRIM28 (select the gene name)
DataMed IndexTRIM28
Probes
Litterature
PubMed319 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM28
EVEXTRIM28
GoPubMedTRIM28
iHOPTRIM28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:14:20 CET 2020

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