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TRIM29 (tripartite motif containing 29)

Identity

Alias_namestripartite motif-containing 29
Alias_symbol (synonym)ATDC
FLJ36085
Other alias
HGNC (Hugo) TRIM29
LocusID (NCBI) 23650
Atlas_Id 42701
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 120111275 and ends at 120128913 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLEKHA5 (12p12.3) / TRIM29 (11q23.3)TRIM29 (11q23.3) / SDC1 (2p24.1)TRIM29 (11q23.3) / TRIM29 (11q23.3)
TSPAN11 (12p11.21) / TRIM29 (11q23.3)UVRAG (11q13.5) / TRIM29 (11q23.3)UVRAG 11q13.5 / TRIM29 11q23.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM29   17274
Cards
Entrez_Gene (NCBI)TRIM29  23650  tripartite motif containing 29
AliasesATDC
GeneCards (Weizmann)TRIM29
Ensembl hg19 (Hinxton)ENSG00000137699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137699 [Gene_View]  chr11:120111275-120128913 [Contig_View]  TRIM29 [Vega]
ICGC DataPortalENSG00000137699
TCGA cBioPortalTRIM29
AceView (NCBI)TRIM29
Genatlas (Paris)TRIM29
WikiGenes23650
SOURCE (Princeton)TRIM29
Genetics Home Reference (NIH)TRIM29
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM29  -     chr11:120111275-120128913 -  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM29  -     11q23.3   [Description]    (hg19-Feb_2009)
EnsemblTRIM29 - 11q23.3 [CytoView hg19]  TRIM29 - 11q23.3 [CytoView hg38]
Mapping of homologs : NCBITRIM29 [Mapview hg19]  TRIM29 [Mapview hg38]
OMIM610658   
Gene and transcription
Genbank (Entrez)AF230388 AF230389 AK093404 AK122720 AK223090
RefSeq transcript (Entrez)NM_001330382 NM_012101 NM_058193
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM29
Cluster EST : UnigeneHs.504115 [ NCBI ]
CGAP (NCI)Hs.504115
Alternative Splicing GalleryENSG00000137699
Gene ExpressionTRIM29 [ NCBI-GEO ]   TRIM29 [ EBI - ARRAY_EXPRESS ]   TRIM29 [ SEEK ]   TRIM29 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23650
GTEX Portal (Tissue expression)TRIM29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14134   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14134  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14134
Splice isoforms : SwissVarQ14134
PhosPhoSitePlusQ14134
Domaine pattern : Prosite (Expaxy)ZF_BBOX (PS50119)   
Domains : Interpro (EBI)Znf_B-box   
Domain families : Pfam (Sanger)zf-B_box (PF00643)   
Domain families : Pfam (NCBI)pfam00643   
Domain families : Smart (EMBL)BBOX (SM00336)  
Conserved Domain (NCBI)TRIM29
DMDM Disease mutations23650
Blocks (Seattle)TRIM29
PDB (SRS)2CSV   
PDB (PDBSum)2CSV   
PDB (IMB)2CSV   
PDB (RSDB)2CSV   
Structural Biology KnowledgeBase2CSV   
SCOP (Structural Classification of Proteins)2CSV   
CATH (Classification of proteins structures)2CSV   
SuperfamilyQ14134
Human Protein AtlasENSG00000137699
Peptide AtlasQ14134
HPRD10280
IPIIPI00073096   IPI00232492   IPI00985493   IPI00977054   IPI00976356   IPI00977077   IPI00977660   IPI00977757   IPI00980087   IPI00984203   IPI00979507   IPI00984849   IPI00982416   IPI00975743   
Protein Interaction databases
DIP (DOE-UCLA)Q14134
IntAct (EBI)Q14134
FunCoupENSG00000137699
BioGRIDTRIM29
STRING (EMBL)TRIM29
ZODIACTRIM29
Ontologies - Pathways
QuickGOQ14134
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  p53 binding  transcription factor activity, sequence-specific DNA binding  protein binding  cytoplasm  cell-cell adherens junction  transcription from RNA polymerase II promoter  zinc ion binding  identical protein binding  cell-cell adhesion  cadherin binding involved in cell-cell adhesion  negative regulation of protein localization to nucleus  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  p53 binding  transcription factor activity, sequence-specific DNA binding  protein binding  cytoplasm  cell-cell adherens junction  transcription from RNA polymerase II promoter  zinc ion binding  identical protein binding  cell-cell adhesion  cadherin binding involved in cell-cell adhesion  negative regulation of protein localization to nucleus  
NDEx NetworkTRIM29
Atlas of Cancer Signalling NetworkTRIM29
Wikipedia pathwaysTRI]29|/TD>
Orthology - Evolution
OrthoDB23650
GeneTree (enSembl)ENSG00000137699
Phylogenetic Trees/Animal Genes : TreeFamTRIM29
HOVERGENQ14134
HOGENOMQ14134
Homologs : HomoloGeneTRIM29
Homology/Alignments : Family Browser (UCSC)TRIM29
Gene fusions - Rearrangements
Fusion : MitelmanUVRAG/TRIM29 [11q13.5/11q23.3]  [t(11;11)(q13;q23)]  
Fusion: TCGAUVRAG 11q13.5 TRIM29 11q23.3 OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM29
dbVarTRIM29
ClinVarTRIM29
1000_GenomesTRIM29 
Exome Variant ServerTRIM29
ExAC (Exome Aggregation Consortium)TRIM29 (select the gene name)
Genetic variants : HAPMAP23650
Genomic Variants (DGV)TRIM29 [DGVbeta]
DECIPHERTRIM29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM29 
Mutations
ICGC Data PortalTRIM29 
TCGA Data PortalTRIM29 
Broad Tumor PortalTRIM29
OASIS PortalTRIM29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM29
DgiDB (Drug Gene Interaction Database)TRIM29
DoCM (Curated mutations)TRIM29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM29 (select a term)
intoGenTRIM29
Cancer3DTRIM29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610658   
Orphanet
MedgenTRIM29
Genetic Testing Registry TRIM29
NextProtQ14134 [Medical]
TSGene23650
GENETestsTRIM29
Target ValidationTRIM29
Huge Navigator TRIM29 [HugePedia]
snp3D : Map Gene to Disease23650
BioCentury BCIQTRIM29
ClinGenTRIM29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23650
Chemical/Pharm GKB GenePA38218
Clinical trialTRIM29
Miscellaneous
canSAR (ICR)TRIM29 (select the gene name)
Probes
Litterature
PubMed59 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM29
EVEXTRIM29
GoPubMedTRIM29
iHOPTRIM29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:36:18 CEST 2017

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