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TRIM3 (tripartite motif containing 3)

Identity

Alias_namesRNF22
tripartite motif-containing 3
Alias_symbol (synonym)HAC1
BERP
RNF97
Other alias
HGNC (Hugo) TRIM3
LocusID (NCBI) 10612
Atlas_Id 50894
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6448613 and ends at 6473984 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AUTS2 (7q11.22) / TRIM3 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRIM3   10064
Cards
Entrez_Gene (NCBI)TRIM3  10612  tripartite motif containing 3
AliasesBERP; HAC1; RNF22; RNF97
GeneCards (Weizmann)TRIM3
Ensembl hg19 (Hinxton)ENSG00000110171 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110171 [Gene_View]  ENSG00000110171 [Sequence]  chr11:6448613-6473984 [Contig_View]  TRIM3 [Vega]
ICGC DataPortalENSG00000110171
TCGA cBioPortalTRIM3
AceView (NCBI)TRIM3
Genatlas (Paris)TRIM3
WikiGenes10612
SOURCE (Princeton)TRIM3
Genetics Home Reference (NIH)TRIM3
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM3  -     chr11:6448613-6473984 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM3  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblTRIM3 - 11p15.4 [CytoView hg19]  TRIM3 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBITRIM3 [Mapview hg19]  TRIM3 [Mapview hg38]
OMIM605493   
Gene and transcription
Genbank (Entrez)AF045239 AF220020 AF220021 AF220022 AK122682
RefSeq transcript (Entrez)NM_001248006 NM_001248007 NM_006458 NM_033278
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM3
Cluster EST : UnigeneHs.591992 [ NCBI ]
CGAP (NCI)Hs.591992
Alternative Splicing GalleryENSG00000110171
Gene ExpressionTRIM3 [ NCBI-GEO ]   TRIM3 [ EBI - ARRAY_EXPRESS ]   TRIM3 [ SEEK ]   TRIM3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10612
GTEX Portal (Tissue expression)TRIM3
Human Protein AtlasENSG00000110171-TRIM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75382   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75382  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75382
Splice isoforms : SwissVarO75382
PhosPhoSitePlusO75382
Domaine pattern : Prosite (Expaxy)FILAMIN_REPEAT (PS50194)    NHL (PS51125)    ZF_BBOX (PS50119)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)6-blade_b-propeller_TolB-like    Bbox_C    Filamin/ABP280_repeat-like    Filamin/ABP280_rpt    Ig-like_fold    Ig_E-set    NHL_repeat    NHL_repeat_subgr    Znf-RING_LisH    Znf_B-box    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domain families : Pfam (Sanger)Filamin (PF00630)    NHL (PF01436)    zf-B_box (PF00643)    zf-RING_UBOX (PF13445)   
Domain families : Pfam (NCBI)pfam00630    pfam01436    pfam00643    pfam13445   
Domain families : Smart (EMBL)BBC (SM00502)  BBOX (SM00336)  IG_FLMN (SM00557)  RING (SM00184)  
Conserved Domain (NCBI)TRIM3
DMDM Disease mutations10612
Blocks (Seattle)TRIM3
SuperfamilyO75382
Human Protein Atlas [tissue]ENSG00000110171-TRIM3 [tissue]
Peptide AtlasO75382
IPIIPI00152001   IPI00216078   IPI00445029   IPI00985414   IPI01014134   IPI00983536   IPI00984864   
Protein Interaction databases
DIP (DOE-UCLA)O75382
IntAct (EBI)O75382
FunCoupENSG00000110171
BioGRIDTRIM3
STRING (EMBL)TRIM3
ZODIACTRIM3
Ontologies - Pathways
QuickGOO75382
Ontology : AmiGOprotein polyubiquitination  protein binding  cytoplasm  early endosome  Golgi apparatus  nervous system development  protein C-terminus binding  zinc ion binding  protein transport  protein ubiquitination  dendrite  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein polyubiquitination  protein binding  cytoplasm  early endosome  Golgi apparatus  nervous system development  protein C-terminus binding  zinc ion binding  protein transport  protein ubiquitination  dendrite  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  ubiquitin protein ligase activity  
NDEx NetworkTRIM3
Atlas of Cancer Signalling NetworkTRIM3
Wikipedia pathwaysTRIM3
Orthology - Evolution
OrthoDB10612
GeneTree (enSembl)ENSG00000110171
Phylogenetic Trees/Animal Genes : TreeFamTRIM3
HOVERGENO75382
HOGENOMO75382
Homologs : HomoloGeneTRIM3
Homology/Alignments : Family Browser (UCSC)TRIM3
Gene fusions - Rearrangements
Fusion : QuiverTRIM3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIM3
dbVarTRIM3
ClinVarTRIM3
1000_GenomesTRIM3 
Exome Variant ServerTRIM3
ExAC (Exome Aggregation Consortium)ENSG00000110171
GNOMAD BrowserENSG00000110171
Varsome BrowserTRIM3
Genetic variants : HAPMAP10612
Genomic Variants (DGV)TRIM3 [DGVbeta]
DECIPHERTRIM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIM3 
Mutations
ICGC Data PortalTRIM3 
TCGA Data PortalTRIM3 
Broad Tumor PortalTRIM3
OASIS PortalTRIM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRIM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDTRIM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIM3
DgiDB (Drug Gene Interaction Database)TRIM3
DoCM (Curated mutations)TRIM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIM3 (select a term)
intoGenTRIM3
Cancer3DTRIM3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605493   
Orphanet
DisGeNETTRIM3
MedgenTRIM3
Genetic Testing Registry TRIM3
NextProtO75382 [Medical]
TSGene10612
GENETestsTRIM3
Target ValidationTRIM3
Huge Navigator TRIM3 [HugePedia]
snp3D : Map Gene to Disease10612
BioCentury BCIQTRIM3
ClinGenTRIM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10612
Chemical/Pharm GKB GenePA35534
Clinical trialTRIM3
Miscellaneous
canSAR (ICR)TRIM3 (select the gene name)
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM3
EVEXTRIM3
GoPubMedTRIM3
iHOPTRIM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:59:06 CEST 2018

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